Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BATR1942_RS09865 Genome accession   NC_014639
Coordinates   2038649..2039446 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033649..2044446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS09840 (BATR1942_10395) - 2034081..2034824 (-) 744 WP_003325489.1 glycerophosphodiester phosphodiesterase -
  BATR1942_RS09845 (BATR1942_10400) - 2034936..2035559 (-) 624 WP_003325488.1 N-acetylmuramoyl-L-alanine amidase family protein -
  BATR1942_RS09850 (BATR1942_10405) - 2035582..2035884 (-) 303 WP_003325487.1 hypothetical protein -
  BATR1942_RS09855 (BATR1942_10410) - 2036340..2037458 (+) 1119 WP_003325486.1 NADH-dependent flavin oxidoreductase -
  BATR1942_RS09860 (BATR1942_10415) - 2037624..2038481 (+) 858 WP_003325485.1 manganese catalase family protein -
  BATR1942_RS09865 (BATR1942_10420) spo0A 2038649..2039446 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  BATR1942_RS09870 (BATR1942_10425) spoIVB 2039730..2041010 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  BATR1942_RS09875 (BATR1942_10430) recN 2041205..2042935 (-) 1731 WP_003325482.1 DNA repair protein RecN Machinery gene
  BATR1942_RS09880 (BATR1942_10435) argR 2042970..2043419 (-) 450 WP_003325480.1 arginine repressor ArgR -
  BATR1942_RS09885 (BATR1942_10440) - 2043518..2044363 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=38769 BATR1942_RS09865 WP_010789174.1 2038649..2039446(-) (spo0A) [Bacillus atrophaeus 1942]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=38769 BATR1942_RS09865 WP_010789174.1 2038649..2039446(-) (spo0A) [Bacillus atrophaeus 1942]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGTCTGTCTTTGTTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGATGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGTATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCTATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTTGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974

Multiple sequence alignment