Detailed information NTG0387652

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ26_RS07885
• Genome accession: NZ_CP051735
• Coordinates: 1639073..1640065 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-108
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1634073..1645065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ26_RS07865 (HHJ26_07865)	ygbM	1634704..1635480 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
HHJ26_RS07870 (HHJ26_07870)	ygbN	1635569..1636933 (+)	1365	WP_000104443.1	GntP family transporter	-
HHJ26_RS07875 (HHJ26_07875)	-	1637076..1638119 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ26_RS07880 (HHJ26_07880)	-	1638344..1638895 (+)	552	WP_001179442.1	flavodoxin family protein	-
HHJ26_RS07885 (HHJ26_07885)	rpoS	1639073..1640065 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ26_RS07890 (HHJ26_07890)	nlpD	1640128..1641222 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ26_RS07895 (HHJ26_07895)	pcm	1641407..1642033 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ26_RS07900 (HHJ26_07900)	surE	1642027..1642788 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ26_RS07905 (HHJ26_07905)	truD	1642769..1643818 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
HHJ26_RS07910 (HHJ26_07910)	ispF	1643815..1644294 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ26_RS07915 (HHJ26_07915)	ispD	1644294..1645004 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387652 HHJ26_RS07885 WP_000081550.1 1639073..1640065(-) (rpoS) [Escherichia coli strain SCU-108]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387652 HHJ26_RS07885 WP_000081550.1 1639073..1640065(-) (rpoS) [Escherichia coli strain SCU-108]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715