Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   HHJ27_RS22445 Genome accession   NZ_CP051733
Coordinates   4760316..4760906 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain SCU-109     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 4755316..4765906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ27_RS22430 (HHJ27_22430) uhpT 4755838..4757229 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  HHJ27_RS22435 (HHJ27_22435) uhpC 4757485..4758804 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  HHJ27_RS22440 (HHJ27_22440) uhpB 4758814..4760316 (-) 1503 WP_001551898.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  HHJ27_RS22445 (HHJ27_22445) letA 4760316..4760906 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  HHJ27_RS22450 (HHJ27_22450) - 4761068..4762537 (-) 1470 WP_001596317.1 hypothetical protein -
  HHJ27_RS22455 (HHJ27_22455) - 4762813..4763295 (-) 483 WP_123005011.1 hypothetical protein -
  HHJ27_RS22460 (HHJ27_22460) ilvN 4764371..4764661 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=387620 HHJ27_RS22445 WP_000633668.1 4760316..4760906(-) (letA) [Escherichia coli strain SCU-109]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=387620 HHJ27_RS22445 WP_000633668.1 4760316..4760906(-) (letA) [Escherichia coli strain SCU-109]
ATGATCACCGTTGCACTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGTCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment