Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FOB45_RS18415 Genome accession   NZ_CP044086
Coordinates   2379060..2379698 (-) Length   212 a.a.
NCBI ID   WP_019365918.1    Uniprot ID   -
Organism   Pseudomonas luteola strain FDAARGOS_637     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374060..2384698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB45_RS18385 (FOB45_18385) murB 2375168..2376193 (-) 1026 WP_010797722.1 UDP-N-acetylmuramate dehydrogenase -
  FOB45_RS18390 (FOB45_18390) - 2376174..2376653 (-) 480 WP_010797721.1 low molecular weight protein-tyrosine-phosphatase -
  FOB45_RS18395 (FOB45_18395) kdsB 2376653..2377420 (-) 768 WP_150347732.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FOB45_RS18400 (FOB45_18400) - 2377417..2377602 (-) 186 WP_010797719.1 Trm112 family protein -
  FOB45_RS18405 (FOB45_18405) lpxK 2377628..2378626 (-) 999 WP_010797718.1 tetraacyldisaccharide 4'-kinase -
  FOB45_RS18410 (FOB45_18410) - 2378623..2379063 (-) 441 WP_010797717.1 biopolymer transporter ExbD -
  FOB45_RS18415 (FOB45_18415) exbB 2379060..2379698 (-) 639 WP_019365918.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FOB45_RS18420 (FOB45_18420) comA 2379748..2381979 (-) 2232 WP_150347733.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOB45_RS18425 (FOB45_18425) lolD 2382036..2382719 (-) 684 WP_010797714.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FOB45_RS18430 (FOB45_18430) - 2382712..2383956 (-) 1245 WP_074827482.1 lipoprotein-releasing ABC transporter permease subunit -
  FOB45_RS18435 (FOB45_18435) lolD 2383991..2384674 (-) 684 WP_019365915.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23186.34 Da        Isoelectric Point: 6.2585

>NTDB_id=387561 FOB45_RS18415 WP_019365918.1 2379060..2379698(-) (exbB) [Pseudomonas luteola strain FDAARGOS_637]
MFELVKAGGWMMLPIILSSIVGMAIVAERLWTLRRARVVPPQLLAQVWKWLQDNSLTSEKLKELRANSPLGEVMAAGLAN
SRHGREVMKEAIEEAGSRIVHDLERYLNTLGTIAAMAPLMGLLGTVFGMIEIFSSFMESGLANAPVLAGGISKALLTTAA
GLIVAIPAVFFHRFLLRRVDELIVSMEQESIKLVEVVQGDREVDFVTEGTKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=387561 FOB45_RS18415 WP_019365918.1 2379060..2379698(-) (exbB) [Pseudomonas luteola strain FDAARGOS_637]
GTGTTCGAACTGGTCAAAGCAGGCGGCTGGATGATGCTGCCAATTATTCTGAGTTCTATTGTAGGCATGGCTATTGTAGC
CGAGCGGTTATGGACACTGCGCCGTGCACGTGTCGTTCCGCCGCAACTGTTGGCTCAGGTATGGAAGTGGCTGCAAGATA
ATTCGCTCACAAGCGAGAAGCTTAAGGAGTTGCGCGCCAATTCGCCTTTGGGTGAGGTAATGGCTGCAGGGCTTGCCAAT
TCCCGTCATGGCCGTGAAGTCATGAAAGAGGCCATTGAAGAGGCTGGTAGCCGCATCGTGCATGATCTGGAGCGCTATCT
GAATACCCTAGGTACGATTGCTGCCATGGCACCCTTGATGGGACTGCTAGGCACGGTGTTTGGCATGATCGAGATCTTCA
GCTCTTTCATGGAAAGCGGTCTGGCCAACGCTCCGGTTCTGGCTGGCGGTATCTCCAAGGCCTTGCTGACCACGGCGGCT
GGTCTGATCGTGGCTATTCCTGCCGTATTCTTCCATCGCTTCCTGCTGCGTCGTGTCGATGAACTGATTGTCTCTATGGA
ACAAGAGTCCATCAAGCTGGTTGAAGTCGTTCAGGGTGATCGTGAAGTAGACTTCGTCACGGAAGGTACCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.098

96.698

0.736

Multiple sequence alignment