Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   F3P16_RS15785 Genome accession   NZ_CP043953
Coordinates   3345485..3345895 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain K09-14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340485..3350895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS15755 (F3P16_15755) - 3340571..3340840 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  F3P16_RS15760 (F3P16_15760) rapZ 3340837..3341688 (-) 852 WP_000821671.1 RNase adapter RapZ -
  F3P16_RS15765 (F3P16_15765) panC 3341711..3342559 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  F3P16_RS15770 (F3P16_15770) panB 3342563..3343372 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  F3P16_RS15775 (F3P16_15775) folK 3343418..3343900 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  F3P16_RS15780 (F3P16_15780) pcnB 3343897..3345360 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  F3P16_RS15785 (F3P16_15785) comEA 3345485..3345895 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  F3P16_RS15790 (F3P16_15790) mazG 3345864..3346670 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  F3P16_RS15795 (F3P16_15795) - 3346782..3347555 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  F3P16_RS15800 (F3P16_15800) - 3347600..3349906 (-) 2307 WP_071210928.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=386790 F3P16_RS15785 WP_002041921.1 3345485..3345895(-) (comEA) [Acinetobacter baumannii strain K09-14]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=386790 F3P16_RS15785 WP_002041921.1 3345485..3345895(-) (comEA) [Acinetobacter baumannii strain K09-14]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCACAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment