Detailed information NTG0386583

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F1E05_RS01110
• Genome accession: NZ_CP043929
• Coordinates: 243987..245339 (+)
• Length: 450 a.a.
• NCBI ID: WP_150046152.1
• Uniprot ID: -
• Organism: Methylomonas rhizoryzae strain GJ1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 238987..250339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1E05_RS01095	sucD	239910..240782 (-)	873	WP_150046149.1	succinate--CoA ligase subunit alpha	-
F1E05_RS01100	sucC	240782..241951 (-)	1170	WP_150046150.1	ADP-forming succinate--CoA ligase subunit beta	-
F1E05_RS01105	-	242365..243990 (+)	1626	WP_150046151.1	PAS domain-containing sensor histidine kinase	-
F1E05_RS01110	pilR	243987..245339 (+)	1353	WP_150046152.1	sigma-54 dependent transcriptional regulator	Regulator
F1E05_RS01115	-	245347..245850 (-)	504	WP_150046153.1	hypothetical protein	-
F1E05_RS01120	-	245990..247858 (-)	1869	WP_150046154.1	GGDEF and EAL domain-containing protein	-
F1E05_RS01125	-	248040..248885 (+)	846	WP_150046155.1	HDOD domain-containing protein	-
F1E05_RS01130	-	249072..249416 (+)	345	WP_150046156.1	DUF2069 domain-containing protein	-
F1E05_RS01135	hda	249422..250120 (+)	699	WP_150046157.1	DnaA regulatory inactivator Hda	-

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 49459.87 Da
• Isoelectric Point: 6.6978

>NTDB_id=386583 F1E05_RS01110 WP_150046152.1 243987..245339(+) (pilR) [Methylomonas rhizoryzae strain GJ1]
MTKPVALLVDDEPDILELLEITLNRMDIQTCGAQTLAQAKQLLANQSFDLCLTDMRLPDGDGLELVDLIQSTGLSLPVAV
ITAHASVDVAIKAMKKGAFDFLTKPVDLQALRQLIGNALQISELQGASKERRTRDTLLGESAAMREIRSKIQKVARNQAP
IYISGESGSGKELVAKLIHQQSPRADKAFVAINCGAIPPELMESEFFGHKRGSFSGAIADKQGFFQAAHGGTLFLDEVAD
LPLALQVKLLRAIQEKKVRPIGEQQEVAVDIRLLSATHKDLAKMVQEGSFRQDLYYRINVIELSLPPLRARAEDIPQLAL
HVLQRLAKANGVLTPQLSASALAALQQYEFPGNVRELENILERALALHEGDCIDAGDLNIPAQHGNASFNREQQESARKN
MTLESYLQNVEKRALTAALQQNSWNKTATAQQLGMTFRSLCFRLKKFGLD

Nucleotide

• Length: 1353 bp

>NTDB_id=386583 F1E05_RS01110 WP_150046152.1 243987..245339(+) (pilR) [Methylomonas rhizoryzae strain GJ1]
ATGACCAAACCCGTTGCATTACTGGTAGACGACGAGCCCGACATTTTGGAGCTACTGGAAATTACCCTGAATCGCATGGA
CATTCAAACCTGCGGCGCACAAACTTTGGCGCAAGCCAAACAGTTGCTGGCCAATCAATCGTTCGATTTATGCTTGACCG
ACATGCGCTTGCCGGACGGAGACGGCTTGGAGTTGGTCGATTTGATTCAAAGTACCGGCTTGTCGCTGCCGGTTGCCGTA
ATCACCGCGCATGCCAGCGTCGACGTCGCAATCAAAGCCATGAAAAAAGGCGCTTTCGATTTTTTGACTAAACCGGTGGA
TTTACAGGCGTTAAGGCAGTTGATCGGCAACGCTTTACAGATATCCGAGCTGCAAGGCGCCAGCAAGGAACGCCGCACCC
GCGATACTTTGCTCGGCGAATCGGCGGCGATGCGGGAAATTCGCTCCAAGATTCAAAAAGTCGCCAGAAACCAGGCGCCG
ATTTATATCAGCGGTGAATCGGGGTCGGGCAAGGAATTGGTGGCCAAGTTGATCCATCAACAAAGTCCGCGGGCGGACAA
AGCCTTCGTTGCGATCAACTGCGGGGCGATCCCGCCTGAATTGATGGAAAGCGAATTTTTCGGACATAAGCGCGGCAGTT
TTAGCGGTGCGATAGCCGACAAACAAGGCTTTTTTCAAGCGGCGCACGGCGGAACCTTGTTCTTGGACGAAGTCGCCGAT
CTGCCGTTGGCCTTGCAGGTTAAACTACTCAGAGCCATTCAGGAAAAGAAAGTACGGCCGATAGGCGAACAACAGGAAGT
AGCGGTGGACATACGCTTACTCAGCGCCACCCACAAGGATTTGGCGAAAATGGTACAGGAAGGCAGTTTTCGTCAGGATT
TATATTACAGGATCAACGTCATCGAACTCAGCTTGCCACCGTTACGGGCCCGCGCCGAAGACATCCCCCAACTGGCATTG
CACGTGCTGCAACGATTGGCCAAGGCTAACGGCGTGCTTACCCCGCAACTGAGTGCATCCGCCCTCGCCGCACTGCAGCA
ATACGAATTTCCCGGCAACGTCCGAGAGCTCGAAAATATTTTGGAGCGCGCGTTGGCCTTGCACGAAGGCGATTGCATAG
ACGCCGGCGATTTAAACATACCGGCGCAGCACGGCAATGCGAGCTTTAACCGGGAACAGCAAGAAAGCGCACGGAAAAAC
ATGACGTTGGAAAGCTATTTGCAAAACGTCGAAAAACGGGCGCTGACAGCGGCGCTGCAACAAAACAGCTGGAACAAAAC
GGCAACTGCACAACAACTTGGAATGACGTTTCGTTCCTTGTGTTTCAGACTGAAAAAATTCGGCTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (407-447)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.778	100	0.598
pilR	Acinetobacter baumannii strain A118	49.134	100	0.504
luxO	Vibrio cholerae strain A1552	37.613	98.667	0.371