Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   F2A31_RS14455 Genome accession   NZ_CP043909
Coordinates   3103989..3105416 (+) Length   475 a.a.
NCBI ID   WP_150027185.1    Uniprot ID   A0A5P1UW80
Organism   Acinetobacter suaedae strain C16S1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098989..3110416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS14435 (F2A31_14435) thrC 3099273..3100412 (+) 1140 WP_150027177.1 threonine synthase -
  F2A31_RS14440 (F2A31_14440) pbpG 3100472..3101536 (-) 1065 WP_150027179.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  F2A31_RS14445 (F2A31_14445) - 3101747..3102382 (+) 636 WP_150027181.1 response regulator -
  F2A31_RS14450 (F2A31_14450) pilS 3102401..3103966 (+) 1566 WP_150027183.1 PAS domain-containing sensor histidine kinase Regulator
  F2A31_RS14455 (F2A31_14455) pilR 3103989..3105416 (+) 1428 WP_150027185.1 sigma-54 dependent transcriptional regulator Regulator
  F2A31_RS14460 (F2A31_14460) - 3105468..3106634 (-) 1167 WP_150027187.1 S41 family peptidase -
  F2A31_RS14465 (F2A31_14465) gpmI 3106644..3108188 (-) 1545 WP_150027189.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  F2A31_RS14470 (F2A31_14470) lptG 3108313..3109383 (-) 1071 WP_150027191.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 53448.35 Da        Isoelectric Point: 6.2469

>NTDB_id=386490 F2A31_RS14455 WP_150027185.1 3103989..3105416(+) (pilR) [Acinetobacter suaedae strain C16S1]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGKFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRNPIPTPSPHSYSQ
EEAEQPQYTSPNTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386490 F2A31_RS14455 WP_150027185.1 3103989..3105416(+) (pilR) [Acinetobacter suaedae strain C16S1]
ATGGCAACTAAACAACCACTCGTCTTGCTTGTAGACGATGAAGAGGACTTGTGTCTCCTCATGCAAATGACACTCGCTCG
AATGGGGATTAAGACACATCTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACCGAATTTCAATATGATGCATGTT
TAACGGATTTAAACCTTCCTGATGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAACTATCCAAACACCCCGATC
GCTGTGTTGACTGCGTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCAGGGGCATTTGACTTCGTTAGCAAACC
AGTCAATCAAGTGCATTTGGATCAATTGATTCAAAAGGCTTTGAATAGACCACGACCTGAACAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTACTGATTGGACGCTCTGCACCGATTCAACAACTACGCATTGCATTAAAGAAAATCGCACGATCT
CAAGCACCAGTCTTTATTACTGGAGAATCAGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTGCACCGGTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGTGCTATTCCAGCAGAACTGATGGAAAGTGAACTTTTTGGGCATAAAA
AAGGCAGTTTCACCGGTGCCACTCAAGATAAACAAGGTCTCATTTTATCTGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCAGAGCTACCCTTAAACATGCAAGTGAAGTTATTGCGAGCAGTGCAAGAAAAGAAAATCAGGCCTGTCGGCTCAGA
TCAAGAAATTGATGTCGATTTCCGAGTGATTAGCGCCAGCCATCAAGATCTTGAGTTACTGGTCCAACAAGGAAAATTCC
GACAAGATTTATTTTTCCGCATCCATGTCATGGATATCGTCCTACCGCCATTACGTGAACGTGGACAGGATATCTTGTTA
TTGGCGAATCACTTTATTCAGAAAATTAGCCAGGAATGGGAGCTGCCTGCCAAGACATTATCGTCTCGTGCAGAGCAATT
CTTATTACAGCAATATTTCCCTGGTAACGTGCGCGAACTACGCAATATTATCGAACGAGCAATAACGCTCAGTGATGATG
AAACGATTGATTTGGCGCACTTACAAACAGCACCATTACGCAATCCAATTCCAACGCCATCACCGCACTCTTATTCTCAA
GAGGAGGCTGAGCAACCACAATACACCAGTCCAAACACAAGCTCGAAAAAACTACCACCTGAAGGCTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTTCTACTCAATGCATTGAATCTAACCCATTGGAATCGGACGCTCGCCGCAAAAAAACTTG
GAATGACTTTCCGTTCCTTGCGCTATCGTTTGAAAAAATTCGGGCTAGACACCGAAGAAGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UW80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.789

100

0.838
  pilR Pseudomonas aeruginosa PAK

50.324

97.474

0.491

Multiple sequence alignment