Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   F2A31_RS06380 Genome accession   NZ_CP043909
Coordinates   1365206..1365913 (-) Length   235 a.a.
NCBI ID   WP_005082645.1    Uniprot ID   A0A5P1UT60
Organism   Acinetobacter suaedae strain C16S1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360206..1370913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS06365 (F2A31_06365) - 1360862..1362454 (+) 1593 WP_150025661.1 urea amidolyase family protein -
  F2A31_RS06370 (F2A31_06370) - 1362438..1364168 (+) 1731 WP_150025662.1 biotin carboxylase N-terminal domain-containing protein -
  F2A31_RS06375 (F2A31_06375) - 1364223..1365002 (-) 780 WP_150025663.1 M48 family metallopeptidase -
  F2A31_RS06380 (F2A31_06380) crp 1365206..1365913 (-) 708 WP_005082645.1 cAMP-activated global transcriptional regulator CRP Regulator
  F2A31_RS06385 (F2A31_06385) - 1366060..1366482 (+) 423 WP_150025664.1 OsmC family protein -
  F2A31_RS06390 (F2A31_06390) - 1366548..1367348 (-) 801 WP_171490563.1 peptidoglycan DD-metalloendopeptidase family protein -
  F2A31_RS06395 (F2A31_06395) clpB 1367612..1370191 (+) 2580 WP_150025666.1 ATP-dependent chaperone ClpB -
  F2A31_RS06400 (F2A31_06400) - 1370360..1370785 (+) 426 WP_150025667.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26618.22 Da        Isoelectric Point: 4.8321

>NTDB_id=386474 F2A31_RS06380 WP_005082645.1 1365206..1365913(-) (crp) [Acinetobacter suaedae strain C16S1]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESRSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFPEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=386474 F2A31_RS06380 WP_005082645.1 1365206..1365913(-) (crp) [Acinetobacter suaedae strain C16S1]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGCCAACTACCTGAATCAGTTAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAGATCACTGTATTTAATTT
TAAAAGGTTCAGTATCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCTTATTTGAACCCTGGGGACTTC
TTTGGTGAAATGGGTCTTTTTGAAAAAAACCCTCAACGTACTGCTGAAGTACGCACTCGAGATGTATGCGAAATTGCAGA
AATTTCTTATGACAATTTCCACGAATTAAGTAAACAGTATCCTGATTTAAGTTACGCAGTATTTGCCCAACTGGTGCGTC
GTCTTAAAAATACAACTCGTAAAGTAACCGACCTTGCCTTTATCGATGTGTCTGGTCGTATTGCGCGTTGCTTAATCGAC
TTATCTGCTCAACCAGAAGCAATGATTCTACCAAACGGTCGTCAGATTCGTATTACTCGCCAAGAAATTGGTCGTATCGT
AGGTTGCTCTCGTGAAATGGTTGGACGTGTACTCAAAACACTCGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCCA
TTTTAATCTTTGATGCATCTTTAGAAGAAAATACCTTCCCTGAAGATGAGTATGATGATGAAGATTGA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UT60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.617

100

0.936
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409

Multiple sequence alignment