Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   F2A31_RS01495 Genome accession   NZ_CP043909
Coordinates   319521..320003 (+) Length   160 a.a.
NCBI ID   WP_150024878.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314521..325003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS01485 (F2A31_01485) pilX 314599..315333 (+) 735 WP_150024876.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  F2A31_RS01490 (F2A31_01490) - 315347..319537 (+) 4191 WP_150024877.1 PilC/PilY family type IV pilus protein -
  F2A31_RS01495 (F2A31_01495) comE 319521..320003 (+) 483 WP_150024878.1 type IV pilin protein Machinery gene
  F2A31_RS01500 (F2A31_01500) rpsP 320169..320426 (+) 258 WP_004641253.1 30S ribosomal protein S16 -
  F2A31_RS01505 (F2A31_01505) rimM 320443..320991 (+) 549 WP_150024879.1 ribosome maturation factor RimM -
  F2A31_RS01510 (F2A31_01510) trmD 321037..321777 (+) 741 WP_150024880.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  F2A31_RS01515 (F2A31_01515) rplS 321914..322285 (+) 372 WP_004641247.1 50S ribosomal protein L19 -
  F2A31_RS01520 (F2A31_01520) - 322347..323321 (-) 975 WP_150024881.1 triacylglycerol lipase -
  F2A31_RS01525 (F2A31_01525) - 323426..324472 (-) 1047 WP_150024882.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17885.60 Da        Isoelectric Point: 8.9958

>NTDB_id=386464 F2A31_RS01495 WP_150024878.1 319521..320003(+) (comE) [Acinetobacter suaedae strain C16S1]
MKVMNNRRSGFTLIELMVTVAIIAILAVIAIPSYDIYIRKADLSTAQQEMHKIAALLEQHRTRNFSYEGFILRDPVLNEG
PYADVNNATKTTLLLPLNASSGKQKFTLILTVDSQTWSLKAESQNPRNYSLLMTSTGLKCKTKTTANITNQSCGLESEDW

Nucleotide


Download         Length: 483 bp        

>NTDB_id=386464 F2A31_RS01495 WP_150024878.1 319521..320003(+) (comE) [Acinetobacter suaedae strain C16S1]
ATGAAAGTAATGAATAATAGGCGATCTGGATTTACCTTGATTGAGCTGATGGTGACAGTGGCGATCATTGCTATTTTAGC
GGTGATCGCCATCCCGAGTTATGATATTTATATCCGTAAAGCTGACTTATCTACAGCTCAACAAGAGATGCATAAAATTG
CTGCATTATTAGAACAGCACCGAACGCGTAACTTTAGTTATGAGGGCTTTATATTAAGAGATCCTGTGCTCAATGAGGGA
CCTTATGCAGATGTGAATAATGCAACCAAGACAACGCTGCTTCTACCGTTAAATGCATCGAGTGGTAAGCAAAAATTTAC
TTTGATTTTAACGGTTGATTCGCAGACTTGGTCACTTAAAGCTGAAAGCCAGAATCCACGTAATTATTCCTTACTTATGA
CCAGCACAGGTTTAAAATGTAAGACTAAAACAACGGCGAATATTACCAATCAAAGTTGTGGTTTAGAGTCAGAAGATTGG
TAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.512

100

0.5
  pilY2 Acinetobacter baumannii D1279779

37.736

99.375

0.375

Multiple sequence alignment