Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   F2A31_RS01485 Genome accession   NZ_CP043909
Coordinates   314599..315333 (+) Length   244 a.a.
NCBI ID   WP_150024876.1    Uniprot ID   A0A5P1UPW9
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309599..320333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS01460 (F2A31_01460) comE 311096..311593 (+) 498 WP_150024873.1 type IV pilin protein Machinery gene
  F2A31_RS01465 (F2A31_01465) - 311587..312045 (+) 459 WP_150024874.1 type IV pilin protein -
  F2A31_RS01470 (F2A31_01470) - 312323..313015 (+) 693 WP_228715638.1 Tfp pilus assembly protein FimT/FimU -
  F2A31_RS01475 (F2A31_01475) pilV 313012..313500 (+) 489 WP_150024875.1 type IV pilus modification protein PilV Machinery gene
  F2A31_RS01480 (F2A31_01480) - 313502..314596 (+) 1095 WP_228715639.1 PilW family protein -
  F2A31_RS01485 (F2A31_01485) pilX 314599..315333 (+) 735 WP_150024876.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  F2A31_RS01490 (F2A31_01490) - 315347..319537 (+) 4191 WP_150024877.1 PilC/PilY family type IV pilus protein -
  F2A31_RS01495 (F2A31_01495) comE 319521..320003 (+) 483 WP_150024878.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26623.34 Da        Isoelectric Point: 5.3225

>NTDB_id=386463 F2A31_RS01485 WP_150024876.1 314599..315333(+) (pilX) [Acinetobacter suaedae strain C16S1]
MINNQKGSTLIIVLMIVLLITIIGTLAIRQSVSSLKLVSNNQMQTLLLQNSDAALMAFQNPAFQQHIAAANGIVGFFKNE
SNRDAELVMCFEGDEPFQLSNASYRLNSTSFVDMATGSGACNKDSVSGGRSAVVTQVYIKREVEQVTVPFADLARGTESL
GAKTENNIRLRVYVISVMKGLLSDPNKTLFIGSNDPKQGCLTKSIDHDGDNLVANCLKKNEENPLYNMQVAEYRFLSDFE
PSGS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=386463 F2A31_RS01485 WP_150024876.1 314599..315333(+) (pilX) [Acinetobacter suaedae strain C16S1]
ATGATTAATAATCAAAAAGGTTCAACACTCATTATTGTACTGATGATCGTTTTACTGATCACGATCATTGGAACGCTTGC
AATTCGCCAAAGCGTGAGTTCCTTAAAGTTGGTGAGCAATAATCAAATGCAAACATTATTGTTGCAAAATTCTGATGCAG
CATTAATGGCTTTCCAAAACCCTGCTTTTCAGCAGCATATCGCTGCAGCGAATGGGATAGTGGGTTTTTTTAAGAATGAA
AGTAATAGAGATGCGGAATTGGTGATGTGTTTTGAGGGCGACGAACCTTTTCAATTGAGTAATGCAAGCTATCGTTTAAA
CAGCACCTCTTTTGTGGATATGGCAACGGGTAGTGGAGCTTGTAACAAAGATTCAGTATCTGGAGGTCGTTCTGCTGTTG
TGACACAGGTATACATTAAACGTGAGGTAGAGCAAGTCACCGTACCATTTGCAGATTTAGCACGTGGTACTGAAAGTTTA
GGTGCAAAAACTGAAAATAATATCCGTTTGCGTGTTTATGTGATTTCAGTGATGAAAGGCTTGCTTTCGGATCCTAATAA
AACTTTGTTCATCGGAAGTAATGATCCAAAGCAAGGTTGCCTAACTAAGAGTATTGATCATGATGGCGATAATCTAGTCG
CTAATTGTTTGAAAAAAAATGAAGAAAATCCTTTATATAATATGCAAGTAGCGGAATATCGCTTCTTATCTGATTTTGAA
CCATCAGGTTCATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UPW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

51.867

98.77

0.512

Multiple sequence alignment