Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F1614_RS06965 Genome accession   NZ_CP043847
Coordinates   1433084..1433593 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NCCP 16828     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1428084..1438593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1614_RS06915 (F1614_06985) - 1428382..1429005 (+) 624 WP_002437175.1 NDxxF motif lipoprotein -
  F1614_RS06925 (F1614_06995) - 1429224..1429601 (+) 378 WP_017464680.1 hypothetical protein -
  F1614_RS06930 (F1614_07000) - 1429966..1430556 (-) 591 WP_002473790.1 histidine phosphatase family protein -
  F1614_RS06935 (F1614_07005) - 1430577..1431209 (-) 633 WP_002473807.1 LysE family translocator -
  F1614_RS06945 (F1614_07015) - 1431685..1431939 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  F1614_RS06950 (F1614_07020) - 1432161..1432421 (+) 261 WP_002473809.1 hypothetical protein -
  F1614_RS12725 (F1614_07025) - 1432535..1432648 (+) 114 Protein_1330 hypothetical protein -
  F1614_RS06960 (F1614_07030) rpsR 1432797..1433039 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  F1614_RS06965 (F1614_07035) ssbA 1433084..1433593 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  F1614_RS06970 (F1614_07040) rpsF 1433616..1433912 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  F1614_RS06975 (F1614_07045) - 1434296..1435104 (+) 809 Protein_1334 GH25 family lysozyme -
  F1614_RS06980 (F1614_07050) - 1435179..1435370 (+) 192 WP_017464678.1 hypothetical protein -
  F1614_RS06985 (F1614_07055) ychF 1435603..1436700 (-) 1098 WP_017464677.1 redox-regulated ATPase YchF -
  F1614_RS06990 (F1614_07060) - 1436712..1436915 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  F1614_RS06995 (F1614_07065) - 1436936..1437811 (-) 876 WP_017464676.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=386247 F1614_RS06965 WP_002447681.1 1433084..1433593(-) (ssbA) [Staphylococcus epidermidis strain NCCP 16828]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=386247 F1614_RS06965 WP_002447681.1 1433084..1433593(-) (ssbA) [Staphylococcus epidermidis strain NCCP 16828]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACGTCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment