Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   F1616_RS06415 Genome accession   NZ_CP043841
Coordinates   1253778..1254287 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain NCCP 16829     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1248778..1259287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1616_RS06365 (F1616_06365) - 1248992..1249615 (+) 624 WP_002456828.1 NDxxF motif lipoprotein -
  F1616_RS06375 (F1616_06375) - 1249835..1250212 (+) 378 WP_002437185.1 hypothetical protein -
  F1616_RS06380 (F1616_06380) - 1250570..1251160 (-) 591 WP_002456826.1 histidine phosphatase family protein -
  F1616_RS06385 (F1616_06385) - 1251181..1251813 (-) 633 WP_001830914.1 LysE family translocator -
  F1616_RS12485 - 1251976..1252065 (+) 90 Protein_1164 hypothetical protein -
  F1616_RS06395 (F1616_06395) - 1252285..1252539 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  F1616_RS06400 (F1616_06400) - 1252761..1253021 (+) 261 WP_001830921.1 hypothetical protein -
  F1616_RS12230 (F1616_06405) - 1253135..1253307 (+) 173 Protein_1167 XRE family transcriptional regulator -
  F1616_RS06410 (F1616_06410) rpsR 1253491..1253733 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  F1616_RS06415 (F1616_06415) ssbA 1253778..1254287 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  F1616_RS06420 (F1616_06420) rpsF 1254310..1254606 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  F1616_RS06425 (F1616_06425) - 1254991..1255800 (+) 810 WP_002455908.1 GH25 family lysozyme -
  F1616_RS06430 (F1616_06430) - 1255874..1256065 (+) 192 WP_001831355.1 hypothetical protein -
  F1616_RS06435 (F1616_06435) ychF 1256298..1257395 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  F1616_RS06440 (F1616_06440) - 1257407..1257610 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  F1616_RS06445 (F1616_06445) - 1257631..1258506 (-) 876 WP_001832526.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=386125 F1616_RS06415 WP_001831333.1 1253778..1254287(-) (ssbA) [Staphylococcus epidermidis strain NCCP 16829]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=386125 F1616_RS06415 WP_001831333.1 1253778..1254287(-) (ssbA) [Staphylococcus epidermidis strain NCCP 16829]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379

Multiple sequence alignment