Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T12_RS11015 Genome accession   NZ_CP043812
Coordinates   2108304..2108735 (-) Length   143 a.a.
NCBI ID   WP_164824785.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103304..2113735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS10980 (F0T12_12305) - 2103649..2104050 (-) 402 Protein_2133 pilin -
  F0T12_RS10985 (F0T12_12310) lpxC 2104178..2105101 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T12_RS13095 - 2105810..2105965 (-) 156 WP_419692603.1 hypothetical protein -
  F0T12_RS12965 - 2106047..2106274 (+) 228 WP_336604526.1 hypothetical protein -
  F0T12_RS11000 (F0T12_12330) - 2106568..2106801 (-) 234 WP_164824784.1 hypothetical protein -
  F0T12_RS11005 (F0T12_12335) pilE 2107101..2107520 (-) 420 WP_164824795.1 pilin Machinery gene
  F0T12_RS12855 (F0T12_12340) - 2107538..2108275 (-) 738 WP_050303812.1 pilin -
  F0T12_RS11015 (F0T12_12345) pilE 2108304..2108735 (-) 432 WP_164824785.1 pilin Machinery gene
  F0T12_RS11020 (F0T12_12355) - 2108831..2109220 (-) 390 Protein_2141 pilin -
  F0T12_RS11025 (F0T12_12370) - 2110019..2110144 (+) 126 Protein_2142 IS110 family transposase -
  F0T12_RS11030 (F0T12_12385) - 2110693..2111382 (-) 690 WP_050157270.1 SprT family zinc-dependent metalloprotease -
  F0T12_RS11035 (F0T12_12390) - 2111379..2112122 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  F0T12_RS11040 (F0T12_12395) gmhB 2112152..2112715 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15327.21 Da        Isoelectric Point: 9.4878

>NTDB_id=385937 F0T12_RS11015 WP_164824785.1 2108304..2108735(-) (pilE) [Neisseria gonorrhoeae strain NG290]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGTWPKDNTSAGVASPTEIKGKYVESVTVTNGVVTAKMLSSGVNKEIQ
GKRLSLWAKRQAGSVKWFCGQPVQRAADAAKAGTDADAVTADANNAIDTKHLPSTCRDKHDAK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=385937 F0T12_RS11015 WP_164824785.1 2108304..2108735(-) (pilE) [Neisseria gonorrhoeae strain NG290]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCTGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCACATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCACCGAAATCAAAGGCA
AATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGCCGC
CGACGCCGCCAAAGCCGGCACCGACGCCGACGCCGTCACCGCCGACGCCAACAACGCCATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATAAACATGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.243

100

0.706
  pilE Neisseria gonorrhoeae strain FA1090

69.93

100

0.699

Multiple sequence alignment