Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   F0T12_RS11005 Genome accession   NZ_CP043812
Coordinates   2107101..2107520 (-) Length   139 a.a.
NCBI ID   WP_164824795.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG290     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102101..2112520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T12_RS10980 (F0T12_12305) - 2103649..2104050 (-) 402 Protein_2133 pilin -
  F0T12_RS10985 (F0T12_12310) lpxC 2104178..2105101 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  F0T12_RS13095 - 2105810..2105965 (-) 156 WP_419692603.1 hypothetical protein -
  F0T12_RS12965 - 2106047..2106274 (+) 228 WP_336604526.1 hypothetical protein -
  F0T12_RS11000 (F0T12_12330) - 2106568..2106801 (-) 234 WP_164824784.1 hypothetical protein -
  F0T12_RS11005 (F0T12_12335) pilE 2107101..2107520 (-) 420 WP_164824795.1 pilin Machinery gene
  F0T12_RS12855 (F0T12_12340) - 2107538..2108275 (-) 738 WP_050303812.1 pilin -
  F0T12_RS11015 (F0T12_12345) pilE 2108304..2108735 (-) 432 WP_164824785.1 pilin Machinery gene
  F0T12_RS11020 (F0T12_12355) - 2108831..2109220 (-) 390 Protein_2141 pilin -
  F0T12_RS11025 (F0T12_12370) - 2110019..2110144 (+) 126 Protein_2142 IS110 family transposase -
  F0T12_RS11030 (F0T12_12385) - 2110693..2111382 (-) 690 WP_050157270.1 SprT family zinc-dependent metalloprotease -
  F0T12_RS11035 (F0T12_12390) - 2111379..2112122 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15101.97 Da        Isoelectric Point: 10.1055

>NTDB_id=385936 F0T12_RS11005 WP_164824795.1 2107101..2107520(-) (pilE) [Neisseria gonorrhoeae strain NG290]
MSNKSALTGHYPNNGEWPKDNDSAGVASASKIIGKYVKQVEVKNGVVTAQMASSNVNKEIQGKKLSLWAKREDGSVKWFC
GQPVQRADAKADTVADAANANGINTKHLPSTCRDKKDTLRFLRPGFQISGNDGHYLNQI

Nucleotide


Download         Length: 420 bp        

>NTDB_id=385936 F0T12_RS11005 WP_164824795.1 2107101..2107520(-) (pilE) [Neisseria gonorrhoeae strain NG290]
ATTTCAAATAAATCAGCCCTCACCGGGCATTACCCGAATAACGGCGAATGGCCCAAAGACAACGACTCTGCCGGCGTGGC
ATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCCAAATGGCTTCAA
GCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGC
GGACAGCCGGTTCAGCGCGCCGACGCCAAAGCCGACACCGTTGCCGACGCCGCCAACGCCAACGGCATCAACACCAAGCA
CCTGCCGTCAACCTGCCGCGATAAAAAGGACACCTTGAGATTTTTACGTCCTGGATTTCAAATTTCAGGGAATGACGGGC
ATTACCTGAATCAAATTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75

80.576

0.604
  pilE Neisseria gonorrhoeae MS11

70.796

81.295

0.576

Multiple sequence alignment