Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   F1539_RS09870 Genome accession   NZ_CP043772
Coordinates   1943919..1944635 (+) Length   238 a.a.
NCBI ID   WP_013526182.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938919..1949635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS09850 (F1539_09855) - 1939858..1940388 (-) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  F1539_RS09855 (F1539_09860) nrfE 1940388..1942295 (-) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1539_RS09860 (F1539_09865) suhB 1942404..1943207 (-) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1539_RS09865 (F1539_09870) comN 1943407..1943919 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1539_RS09870 (F1539_09875) comO 1943919..1944635 (+) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1539_RS09875 (F1539_09880) comP 1944650..1945333 (+) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1539_RS09880 (F1539_09885) comQ 1945326..1945613 (+) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  F1539_RS09885 (F1539_09890) recC 1945659..1949039 (+) 3381 WP_041174963.1 exodeoxyribonuclease V subunit gamma -
  F1539_RS09890 (F1539_09895) nrdR 1949094..1949543 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26711.06 Da        Isoelectric Point: 9.5508

>NTDB_id=385859 F1539_RS09870 WP_013526182.1 1943919..1944635(+) (comO) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHILLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNIGYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=385859 F1539_RS09870 WP_013526182.1 1943919..1944635(+) (comO) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATACTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCGGTTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment