Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F1539_RS09875 Genome accession   NZ_CP043772
Coordinates   1944650..1945333 (+) Length   227 a.a.
NCBI ID   WP_013526181.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1939650..1950333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS09850 (F1539_09855) - 1939858..1940388 (-) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  F1539_RS09855 (F1539_09860) nrfE 1940388..1942295 (-) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1539_RS09860 (F1539_09865) suhB 1942404..1943207 (-) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1539_RS09865 (F1539_09870) comN 1943407..1943919 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1539_RS09870 (F1539_09875) comO 1943919..1944635 (+) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1539_RS09875 (F1539_09880) comP 1944650..1945333 (+) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1539_RS09880 (F1539_09885) comQ 1945326..1945613 (+) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  F1539_RS09885 (F1539_09890) recC 1945659..1949039 (+) 3381 WP_041174963.1 exodeoxyribonuclease V subunit gamma -
  F1539_RS09890 (F1539_09895) nrdR 1949094..1949543 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25441.25 Da        Isoelectric Point: 9.5163

>NTDB_id=385860 F1539_RS09875 WP_013526181.1 1944650..1945333(+) (comP) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MTTQKGIITLTILIFISGLLTAFLLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=385860 F1539_RS09875 WP_013526181.1 1944650..1945333(+) (comP) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGACAACACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGACTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

98.678

100

0.987

Multiple sequence alignment