Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   F1539_RS09865 Genome accession   NZ_CP043772
Coordinates   1943407..1943919 (+) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938407..1948919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS09845 (F1539_09850) nrfF 1938704..1939861 (-) 1158 WP_013526187.1 heme lyase NrfEFG subunit NrfF -
  F1539_RS09850 (F1539_09855) - 1939858..1940388 (-) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  F1539_RS09855 (F1539_09860) nrfE 1940388..1942295 (-) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  F1539_RS09860 (F1539_09865) suhB 1942404..1943207 (-) 804 WP_013526184.1 inositol-1-monophosphatase -
  F1539_RS09865 (F1539_09870) comN 1943407..1943919 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  F1539_RS09870 (F1539_09875) comO 1943919..1944635 (+) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  F1539_RS09875 (F1539_09880) comP 1944650..1945333 (+) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  F1539_RS09880 (F1539_09885) comQ 1945326..1945613 (+) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=385858 F1539_RS09865 WP_013526183.1 1943407..1943919(+) (comN) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=385858 F1539_RS09865 WP_013526183.1 1943407..1943919(+) (comN) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACAATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment