Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HPSJM_RS01705 Genome accession   NC_014560
Coordinates   348132..348932 (+) Length   266 a.a.
NCBI ID   WP_013356349.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 343132..353932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS01670 (HPSJM_01755) pseH 343627..344169 (+) 543 WP_000742731.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  HPSJM_RS01675 (HPSJM_01760) - 344102..345040 (-) 939 WP_000833901.1 tetraacyldisaccharide 4'-kinase -
  HPSJM_RS01680 (HPSJM_01765) - 345037..345819 (-) 783 WP_001168248.1 NAD+ synthase -
  HPSJM_RS01690 (HPSJM_01770) ilvC 346068..347060 (+) 993 WP_001207727.1 ketol-acid reductoisomerase -
  HPSJM_RS01695 (HPSJM_01775) minD 347084..347890 (+) 807 WP_001019047.1 septum site-determining protein MinD -
  HPSJM_RS01700 (HPSJM_01780) minE 347887..348120 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  HPSJM_RS01705 (HPSJM_01785) dprA 348132..348932 (+) 801 WP_013356349.1 DNA-processing protein DprA Machinery gene
  HPSJM_RS01710 (HPSJM_01790) dprB 348929..349333 (+) 405 WP_000599225.1 Holliday junction resolvase RuvX Machinery gene
  HPSJM_RS01715 - 349618..350361 (+) 744 Protein_325 tetratricopeptide repeat protein -
  HPSJM_RS01720 (HPSJM_01810) - 350488..350826 (+) 339 WP_000699885.1 hypothetical protein -
  HPSJM_RS01725 (HPSJM_01815) - 350810..351370 (+) 561 WP_001036518.1 hypothetical protein -
  HPSJM_RS01730 (HPSJM_01820) - 351658..352539 (-) 882 WP_001117176.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29926.86 Da        Isoelectric Point: 7.7999

>NTDB_id=38582 HPSJM_RS01705 WP_013356349.1 348132..348932(+) (dprA) [Helicobacter pylori SJM180]
MKSHFQYSMLENIPKAFDILKDPPKELYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=38582 HPSJM_RS01705 WP_013356349.1 348132..348932(+) (dprA) [Helicobacter pylori SJM180]
ATGAAAAGCCATTTCCAATACAGCATGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAGAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCGATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTGGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACAAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAGAAATACCAAAAACCCTTATTTGTTTTACCCCAACGCCTGAACGAGAGTGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment