Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSJM_RS01710 Genome accession   NC_014560
Coordinates   348929..349333 (+) Length   134 a.a.
NCBI ID   WP_000599225.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343929..354333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS01675 (HPSJM_01760) - 344102..345040 (-) 939 WP_000833901.1 tetraacyldisaccharide 4'-kinase -
  HPSJM_RS01680 (HPSJM_01765) - 345037..345819 (-) 783 WP_001168248.1 NAD+ synthase -
  HPSJM_RS01690 (HPSJM_01770) ilvC 346068..347060 (+) 993 WP_001207727.1 ketol-acid reductoisomerase -
  HPSJM_RS01695 (HPSJM_01775) minD 347084..347890 (+) 807 WP_001019047.1 septum site-determining protein MinD -
  HPSJM_RS01700 (HPSJM_01780) minE 347887..348120 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  HPSJM_RS01705 (HPSJM_01785) dprA 348132..348932 (+) 801 WP_013356349.1 DNA-processing protein DprA Machinery gene
  HPSJM_RS01710 (HPSJM_01790) dprB 348929..349333 (+) 405 WP_000599225.1 Holliday junction resolvase RuvX Machinery gene
  HPSJM_RS01715 - 349618..350361 (+) 744 Protein_325 tetratricopeptide repeat protein -
  HPSJM_RS01720 (HPSJM_01810) - 350488..350826 (+) 339 WP_000699885.1 hypothetical protein -
  HPSJM_RS01725 (HPSJM_01815) - 350810..351370 (+) 561 WP_001036518.1 hypothetical protein -
  HPSJM_RS01730 (HPSJM_01820) - 351658..352539 (-) 882 WP_001117176.1 RluA family pseudouridine synthase -
  HPSJM_RS01735 (HPSJM_01825) recJ 352539..354089 (-) 1551 WP_000810745.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15382.06 Da        Isoelectric Point: 10.0160

>NTDB_id=38583 HPSJM_RS01710 WP_000599225.1 348929..349333(+) (dprB) [Helicobacter pylori SJM180]
MILACDVGLKRIGIAMLLNGVVLPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQKVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=38583 HPSJM_RS01710 WP_000599225.1 348929..349333(+) (dprB) [Helicobacter pylori SJM180]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTGTCTTGCCTTTAGAAGC
GATTTTACGCCATAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAAAAAAAGACATTCAGGTGCTAGTGG
TGGGTAAGCCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATAGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATCTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGAAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925

Multiple sequence alignment