Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | F1538_RS07850 | Genome accession | NZ_CP043771 |
| Coordinates | 1571081..1571494 (+) | Length | 137 a.a. |
| NCBI ID | WP_013526476.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae biotype aegyptius strain HE15/F3028 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1566081..1576494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1538_RS07830 (F1538_07840) | - | 1566563..1569163 (-) | 2601 | WP_013526472.1 | penicillin-binding protein 1A | - |
| F1538_RS07835 (F1538_07845) | comA | 1569262..1570059 (+) | 798 | WP_013526473.1 | pilus assembly protein PilM | Machinery gene |
| F1538_RS07840 (F1538_07850) | comB | 1570060..1570566 (+) | 507 | WP_013526474.1 | hypothetical protein | Machinery gene |
| F1538_RS07845 (F1538_07855) | comC | 1570563..1571084 (+) | 522 | WP_041174979.1 | competence protein ComC | Machinery gene |
| F1538_RS07850 (F1538_07860) | comD | 1571081..1571494 (+) | 414 | WP_013526476.1 | pilus assembly protein PilP | Machinery gene |
| F1538_RS07855 (F1538_07865) | comE | 1571504..1572841 (+) | 1338 | WP_013526477.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| F1538_RS07860 (F1538_07870) | - | 1572854..1573540 (+) | 687 | WP_013526478.1 | ComF family protein | - |
| F1538_RS07865 (F1538_07875) | nfuA | 1573616..1574212 (+) | 597 | WP_013526479.1 | Fe-S biogenesis protein NfuA | - |
| F1538_RS07870 (F1538_07880) | nudC | 1574279..1575073 (+) | 795 | WP_013526480.1 | NAD(+) diphosphatase | - |
| F1538_RS07875 (F1538_07885) | - | 1575109..1575699 (+) | 591 | WP_013526481.1 | YjaG family protein | - |
| F1538_RS07880 (F1538_07890) | - | 1575839..1576111 (+) | 273 | WP_013526482.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=385818 F1538_RS07850 WP_013526476.1 1571081..1571494(+) (comD) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=385818 F1538_RS07850 WP_013526476.1 1571081..1571494(+) (comD) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae 86-028NP |
94.161 |
100 |
0.942 |