Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   F1538_RS07840 Genome accession   NZ_CP043771
Coordinates   1570060..1570566 (+) Length   168 a.a.
NCBI ID   WP_013526474.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE15/F3028     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565060..1575566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1538_RS07820 (F1538_07830) - 1565164..1565493 (-) 330 WP_013526470.1 YbaB/EbfC family nucleoid-associated protein -
  F1538_RS07825 (F1538_07835) - 1565645..1566490 (-) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  F1538_RS07830 (F1538_07840) - 1566563..1569163 (-) 2601 WP_013526472.1 penicillin-binding protein 1A -
  F1538_RS07835 (F1538_07845) comA 1569262..1570059 (+) 798 WP_013526473.1 pilus assembly protein PilM Machinery gene
  F1538_RS07840 (F1538_07850) comB 1570060..1570566 (+) 507 WP_013526474.1 hypothetical protein Machinery gene
  F1538_RS07845 (F1538_07855) comC 1570563..1571084 (+) 522 WP_041174979.1 competence protein ComC Machinery gene
  F1538_RS07850 (F1538_07860) comD 1571081..1571494 (+) 414 WP_013526476.1 pilus assembly protein PilP Machinery gene
  F1538_RS07855 (F1538_07865) comE 1571504..1572841 (+) 1338 WP_013526477.1 type IV pilus secretin PilQ family protein Machinery gene
  F1538_RS07860 (F1538_07870) - 1572854..1573540 (+) 687 WP_013526478.1 ComF family protein -
  F1538_RS07865 (F1538_07875) nfuA 1573616..1574212 (+) 597 WP_013526479.1 Fe-S biogenesis protein NfuA -
  F1538_RS07870 (F1538_07880) nudC 1574279..1575073 (+) 795 WP_013526480.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19689.36 Da        Isoelectric Point: 7.4014

>NTDB_id=385816 F1538_RS07840 WP_013526474.1 1570060..1570566(+) (comB) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
MSMNLLPWRTYQHQKRLGRLAFYIALFILLAANLSLAFSNLIEQQKQDLQAQQTSFEQLNQQLHKTSKQIEQLRGAVQVG
EILTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFRF
DVEQGEEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=385816 F1538_RS07840 WP_013526474.1 1570060..1570566(+) (comB) [Haemophilus influenzae biotype aegyptius strain HE15/F3028]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTGGGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTACTTGCTGCCAATTTAAGCTTGGCTTTTAGCAATCTAATTGAACAACAAAAACAAGATCTGCAAGCGCAACAAA
CATCTTTTGAACAACTTAATCAGCAACTTCATAAAACCTCCAAGCAAATTGAACAGTTGCGTGGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCTAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAAGGGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAGCCTGAACAACAGTCATTGTATTTTCGCTTT
GATGTGGAACAAGGAGAAGAAAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

89.881

100

0.899
  comB Haemophilus influenzae Rd KW20

89.286

100

0.893

Multiple sequence alignment