Detailed information NTG0038578

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPSJM_RS00215
• Genome accession: NC_014560
• Coordinates: 38486..39466 (+)
• Length: 326 a.a.
• NCBI ID: WP_013356315.1
• Uniprot ID: -
• Organism: Helicobacter pylori SJM180
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33486..44466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSJM_RS00185 (HPSJM_00190)	panD	34901..35254 (+)	354	WP_000142271.1	aspartate 1-decarboxylase	-
HPSJM_RS00190 (HPSJM_00195)	-	35257..35559 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPSJM_RS00195 (HPSJM_00200)	-	35559..36554 (+)	996	WP_000468426.1	PDZ domain-containing protein	-
HPSJM_RS00200 (HPSJM_00205)	comB6	36562..37617 (+)	1056	WP_000679750.1	type IV secretion system protein	Machinery gene
HPSJM_RS00205 (HPSJM_00210)	comB7	37633..37746 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPSJM_RS00210 (HPSJM_00215)	comB8	37743..38486 (+)	744	WP_001208399.1	type IV secretion system protein	Machinery gene
HPSJM_RS00215 (HPSJM_00220)	comB9	38486..39466 (+)	981	WP_013356315.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSJM_RS00220 (HPSJM_00225)	comB10	39459..40595 (+)	1137	WP_001045850.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSJM_RS00225 (HPSJM_00230)	-	40665..42077 (+)	1413	WP_000694792.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSJM_RS00230 (HPSJM_00235)	gmd	42106..43251 (+)	1146	WP_000659816.1	GDP-mannose 4,6-dehydratase	-
HPSJM_RS00235 (HPSJM_00240)	-	43244..44176 (+)	933	WP_001002504.1	GDP-L-fucose synthase family protein	-
HPSJM_RS08770	-	44204..44422 (-)	219	Protein_40	anthranilate synthase component I	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37565.31 Da
• Isoelectric Point: 9.4540

>NTDB_id=38578 HPSJM_RS00215 WP_013356315.1 38486..39466(+) (comB9) [Helicobacter pylori SJM180]
MRKILYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENVLENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCLGI
CSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKAKDE

Nucleotide

• Length: 981 bp

>NTDB_id=38578 HPSJM_RS00215 WP_013356315.1 38486..39466(+) (comB9) [Helicobacter pylori SJM180]
ATGCGTAAGATTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGTGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCTAACGCTTTTTTGAAGCCGCAAAATAAAGAAAATGTCCTTGAAAATACCCTTGAAAATGCCCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCGA
TGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATT
TGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTAG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGTTTTGTC
AAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	97.546	100	0.975