Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPSJM_RS00210 Genome accession   NC_014560
Coordinates   37743..38486 (+) Length   247 a.a.
NCBI ID   WP_001208399.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32743..43486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS00185 (HPSJM_00190) panD 34901..35254 (+) 354 WP_000142271.1 aspartate 1-decarboxylase -
  HPSJM_RS00190 (HPSJM_00195) - 35257..35559 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HPSJM_RS00195 (HPSJM_00200) - 35559..36554 (+) 996 WP_000468426.1 PDZ domain-containing protein -
  HPSJM_RS00200 (HPSJM_00205) comB6 36562..37617 (+) 1056 WP_000679750.1 type IV secretion system protein Machinery gene
  HPSJM_RS00205 (HPSJM_00210) comB7 37633..37746 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPSJM_RS00210 (HPSJM_00215) comB8 37743..38486 (+) 744 WP_001208399.1 type IV secretion system protein Machinery gene
  HPSJM_RS00215 (HPSJM_00220) comB9 38486..39466 (+) 981 WP_013356315.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPSJM_RS00220 (HPSJM_00225) comB10 39459..40595 (+) 1137 WP_001045850.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPSJM_RS00225 (HPSJM_00230) - 40665..42077 (+) 1413 WP_000694792.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPSJM_RS00230 (HPSJM_00235) gmd 42106..43251 (+) 1146 WP_000659816.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28726.95 Da        Isoelectric Point: 8.9604

>NTDB_id=38577 HPSJM_RS00210 WP_001208399.1 37743..38486(+) (comB8) [Helicobacter pylori SJM180]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=38577 HPSJM_RS00210 WP_001208399.1 37743..38486(+) (comB8) [Helicobacter pylori SJM180]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATTTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAGGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment