Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMV_RS10815 Genome accession   NC_017501
Coordinates   2107779..2108747 (+) Length   322 a.a.
NCBI ID   WP_002218114.1    Uniprot ID   -
Organism   Neisseria meningitidis 8013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102779..2113747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS10805 (NMV_2188) fetA 2103725..2105869 (+) 2145 WP_002224138.1 TonB-dependent siderophore receptor FetA/FrpB -
  NMV_RS10810 (NMV_2189) - 2106586..2107551 (+) 966 WP_014574266.1 siderophore ABC transporter substrate-binding protein -
  NMV_RS13705 - 2107569..2107760 (+) 192 WP_153308403.1 hypothetical protein -
  NMV_RS10815 (NMV_2190) ceuB 2107779..2108747 (+) 969 WP_002218114.1 ABC transporter permease Machinery gene
  NMV_RS10820 (NMV_2191) - 2108737..2109711 (+) 975 WP_014574267.1 iron chelate uptake ABC transporter family permease subunit -
  NMV_RS10825 (NMV_2192) - 2109756..2110382 (+) 627 WP_014574268.1 FmdE family protein -
  NMV_RS10830 (NMV_2193) - 2110465..2111223 (+) 759 WP_014574269.1 ABC transporter ATP-binding protein -
  NMV_RS10835 (NMV_2194) - 2111539..2112756 (+) 1218 WP_014574270.1 YadA C-terminal domain-containing protein -
  NMV_RS10840 (NMV_2195) - 2112822..2113160 (-) 339 WP_002214902.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34435.71 Da        Isoelectric Point: 9.9393

>NTDB_id=38577 NMV_RS10815 WP_002218114.1 2107779..2108747(+) (ceuB) [Neisseria meningitidis 8013]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAY
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=38577 NMV_RS10815 WP_002218114.1 2107779..2108747(+) (ceuB) [Neisseria meningitidis 8013]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCGGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTTTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAAAGCGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGTCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCAGTGGCGACGTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCTTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTATCGACCGTCTTCGGCGTATTGGGTACGGCGTTGTTTTTGTGGCTTTTGTTGAGGAAACCCGCCTAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391

Multiple sequence alignment