Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPSJM_RS00205 | Genome accession | NC_014560 |
| Coordinates | 37633..37746 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori SJM180 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32633..42746
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSJM_RS00180 (HPSJM_00185) | - | 32683..34911 (+) | 2229 | WP_000357227.1 | AAA family ATPase | - |
| HPSJM_RS00185 (HPSJM_00190) | panD | 34901..35254 (+) | 354 | WP_000142271.1 | aspartate 1-decarboxylase | - |
| HPSJM_RS00190 (HPSJM_00195) | - | 35257..35559 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSJM_RS00195 (HPSJM_00200) | - | 35559..36554 (+) | 996 | WP_000468426.1 | PDZ domain-containing protein | - |
| HPSJM_RS00200 (HPSJM_00205) | comB6 | 36562..37617 (+) | 1056 | WP_000679750.1 | type IV secretion system protein | Machinery gene |
| HPSJM_RS00205 (HPSJM_00210) | comB7 | 37633..37746 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPSJM_RS00210 (HPSJM_00215) | comB8 | 37743..38486 (+) | 744 | WP_001208399.1 | type IV secretion system protein | Machinery gene |
| HPSJM_RS00215 (HPSJM_00220) | comB9 | 38486..39466 (+) | 981 | WP_013356315.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSJM_RS00220 (HPSJM_00225) | comB10 | 39459..40595 (+) | 1137 | WP_001045850.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSJM_RS00225 (HPSJM_00230) | - | 40665..42077 (+) | 1413 | WP_000694792.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=38576 HPSJM_RS00205 WP_001217873.1 37633..37746(+) (comB7) [Helicobacter pylori SJM180]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=38576 HPSJM_RS00205 WP_001217873.1 37633..37746(+) (comB7) [Helicobacter pylori SJM180]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |