Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   F1C79_RS26735 Genome accession   NZ_CP043626
Coordinates   5764366..5764773 (+) Length   135 a.a.
NCBI ID   WP_015475142.1    Uniprot ID   A0AA42HJ21
Organism   Pseudomonas denitrificans (nom. rej.) strain BG1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5759366..5769773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1C79_RS26705 (F1C79_26720) - 5759394..5760398 (-) 1005 WP_138213114.1 aspartate carbamoyltransferase catalytic subunit -
  F1C79_RS26710 (F1C79_26725) pyrR 5760444..5760956 (-) 513 WP_081519598.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  F1C79_RS26715 (F1C79_26730) ruvX 5761095..5761532 (-) 438 WP_138213113.1 Holliday junction resolvase RuvX -
  F1C79_RS26720 (F1C79_26735) - 5761529..5762098 (-) 570 WP_081519600.1 YqgE/AlgH family protein -
  F1C79_RS26725 (F1C79_26740) - 5762173..5763066 (-) 894 WP_081519601.1 energy transducer TonB -
  F1C79_RS26730 (F1C79_26745) gshB 5763123..5764085 (-) 963 WP_081519602.1 glutathione synthase -
  F1C79_RS26735 (F1C79_26750) pilG 5764366..5764773 (+) 408 WP_015475142.1 twitching motility response regulator PilG Regulator
  F1C79_RS26740 (F1C79_26755) pilH 5764820..5765185 (+) 366 WP_024766237.1 twitching motility response regulator PilH -
  F1C79_RS26745 (F1C79_26760) - 5765239..5765775 (+) 537 WP_081519603.1 chemotaxis protein CheW -
  F1C79_RS26750 (F1C79_26765) - 5765859..5767907 (+) 2049 WP_151189060.1 methyl-accepting chemotaxis protein -
  F1C79_RS26755 (F1C79_26770) - 5767970..5768833 (+) 864 WP_151189771.1 protein-glutamate O-methyltransferase -
  F1C79_RS32660 - 5768858..5769502 (+) 645 WP_231708944.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14810.17 Da        Isoelectric Point: 6.8621

>NTDB_id=385545 F1C79_RS26735 WP_015475142.1 5764366..5764773(+) (pilG) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MEQHSDGLKVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEHAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=385545 F1C79_RS26735 WP_015475142.1 5764366..5764773(+) (pilG) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGGAACAGCATTCCGACGGTTTGAAAGTAATGGTGATCGACGATTCCAAGACGATTCGTCGCACGGCTGAAACCCTGCT
GAAGAAAGTCGGCTGCGATGTCATTACAGCCATCGACGGCTTCGACGCGCTGGCCAAGATCGCCGATACCCATCCGAGCA
TCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCATTCAAA
TCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAGTA
CCTCACCAAGCCTTTCAGCAAGGAAGAACTGCTCGGCGCGATCAAGACCCATGTGCCCGACTTCACCCCGGTGGAGCACG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393

Multiple sequence alignment