Detailed information NTG0385531

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: F1C79_RS13550
• Genome accession: NZ_CP043626
• Coordinates: 2998039..3000249 (-)
• Length: 736 a.a.
• NCBI ID: WP_151189707.1
• Uniprot ID: A0A9X7N6L1
• Organism: Pseudomonas denitrificans (nom. rej.) strain BG1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2993039..3005249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1C79_RS13515 (F1C79_13515)	murB	2993387..2994406 (-)	1020	WP_151187738.1	UDP-N-acetylmuramate dehydrogenase	-
F1C79_RS13520 (F1C79_13520)	-	2994403..2994867 (-)	465	WP_151187739.1	low molecular weight protein-tyrosine-phosphatase	-
F1C79_RS13525 (F1C79_13525)	kdsB	2994867..2995631 (-)	765	WP_138214925.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
F1C79_RS13530 (F1C79_13530)	-	2995636..2995821 (-)	186	WP_081519465.1	Trm112 family protein	-
F1C79_RS13535 (F1C79_13535)	lpxK	2995888..2996886 (-)	999	WP_151187740.1	tetraacyldisaccharide 4'-kinase	-
F1C79_RS13540 (F1C79_13540)	-	2996886..2997335 (-)	450	WP_045211644.1	biopolymer transporter ExbD	-
F1C79_RS13545 (F1C79_13545)	exbB	2997332..2997967 (-)	636	WP_017519262.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
F1C79_RS13550 (F1C79_13550)	comA	2998039..3000249 (-)	2211	WP_151189707.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
F1C79_RS13555 (F1C79_13555)	-	3000402..3000932 (+)	531	WP_081519462.1	DUF2062 domain-containing protein	-
F1C79_RS13560 (F1C79_13560)	-	3000993..3002240 (-)	1248	WP_081519461.1	lipoprotein-releasing ABC transporter permease subunit	-
F1C79_RS13565 (F1C79_13565)	lolD	3002252..3002950 (-)	699	WP_017519266.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
F1C79_RS13570 (F1C79_13570)	-	3002943..3004196 (-)	1254	WP_151187741.1	lipoprotein-releasing ABC transporter permease subunit	-
F1C79_RS13575 (F1C79_13575)	-	3004321..3004896 (+)	576	WP_081519458.1	PilZ domain-containing protein	-
F1C79_RS13580 (F1C79_13580)	-	3004911..3005225 (+)	315	WP_151187742.1	phosphodiesterase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79562.00 Da
• Isoelectric Point: 8.7262

>NTDB_id=385531 F1C79_RS13550 WP_151189707.1 2998039..3000249(-) (comA) [Pseudomonas denitrificans (nom. rej.) strain BG1]
MFALALGLLALRWMPALPSGWVLLLLALVALPLLFTRGYFVGLFLLGFAWACQSAQWALDDRLAPELDGRTLWLEGRVEG
LPDRSGPSVRFQLAEVSSPRAKVPATLRLSWFGGPPVEGGERWRLAVKLKRPHGMANGAGFDYEAWLTAQRIGASGSVKD
GQRLEASSGPRAWREAWRQRLLAVDAHGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYALVA
GLARFGCWPARVPWLPSACLLAASGAWAYSLMAGFEVPLQRACVMVSIVLLWRLRYRHRGLWTPLLGALLAVLLVEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTTWRTWLRAQWLMAVGLLPASIALGLPLSVSGVVANLIAVPWVELVVVPLALLG
SLALGVPWLGETLLWVSGGLLELLFRLLGWMAELAPAWQPVAAPIWALVLAMLGALLLLAPAGVPLRALGLAMFLPVFWP
TVPLPAPGMAEIRVLDVGQGLSVLIRTRSQVWLYDTGARNGDFDIGERVVVPTLRSLGIGRLDVLMLSHADNDHAGGAMA
VKRSLRPDQVISGEPERLPEQLQARPCGIEEWIIDGVRLSSWAWAGASESNDRSCALEVEANGERILLTGDLPQPAELAW
LAAHPGERVDWLLAGHHGSRSSSGPAFLRAIRPSTAIISRGANNPYGHPHPSVVERFRTLGIRIQDTAEQGALTLTLGAH
GEVRGVREGAHFWQEN

Nucleotide

• Length: 2211 bp

>NTDB_id=385531 F1C79_RS13550 WP_151189707.1 2998039..3000249(-) (comA) [Pseudomonas denitrificans (nom. rej.) strain BG1]
ATGTTCGCGCTGGCCCTGGGGTTGCTGGCGCTGCGCTGGATGCCGGCGCTGCCATCCGGCTGGGTTCTGCTGCTTCTCGC
GCTGGTCGCGCTGCCGTTGTTGTTCACTCGCGGCTATTTCGTCGGGCTGTTCCTGCTCGGTTTCGCCTGGGCCTGCCAGT
CGGCGCAGTGGGCGCTGGATGATCGTCTGGCGCCGGAGCTGGATGGCCGTACGCTGTGGCTGGAGGGCAGGGTAGAGGGC
CTGCCGGATCGCTCAGGGCCATCGGTGCGCTTCCAGCTCGCCGAGGTCTCCAGCCCTCGCGCGAAGGTCCCGGCCACACT
GCGCCTGTCCTGGTTCGGCGGTCCGCCGGTGGAGGGCGGCGAACGCTGGCGGCTGGCGGTGAAGCTCAAGCGTCCCCACG
GCATGGCCAATGGCGCGGGGTTCGATTACGAAGCCTGGCTCACCGCCCAGCGCATCGGCGCTAGCGGTAGCGTGAAGGAC
GGGCAGCGCCTGGAGGCTTCCAGCGGCCCGCGCGCTTGGCGCGAAGCCTGGCGGCAACGACTGCTGGCGGTGGATGCCCA
TGGGCGCTCCGGGGCGCTCGCCGCGCTGGTGCTGGGCGATGCGTCCGGGCTGACCACGGCGGACTGGCAAGTCCTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCGCTGCTGGCCGGCCTGCTCTATGCACTGGTCGCC
GGGCTGGCGCGCTTCGGTTGCTGGCCGGCGCGAGTCCCGTGGTTGCCCTCTGCCTGCCTGCTGGCCGCAAGCGGTGCCTG
GGCTTACAGCCTGATGGCGGGATTCGAGGTGCCATTGCAGCGCGCCTGCGTCATGGTCTCCATTGTCCTGTTGTGGCGCC
TGCGCTACCGCCATCGTGGGCTATGGACGCCCTTGCTCGGCGCCTTGCTCGCGGTGCTGCTGGTCGAGCCGCTGGTGGTG
CTGTTGCCGGGCTTCTGGCTGTCCTATGCAGCGGTGGCGTTGCTGATCTTCGGCTTCTCGGGGCGTCTGGGGCGCTGGAC
CACCTGGCGTACTTGGCTGCGCGCTCAATGGCTGATGGCGGTCGGTCTGCTGCCGGCGTCCATCGCCCTGGGATTGCCGC
TGAGTGTTTCCGGCGTGGTTGCCAACCTGATCGCCGTGCCCTGGGTCGAGTTGGTCGTCGTGCCGTTGGCGTTGCTGGGG
AGCCTGGCGCTTGGCGTTCCCTGGCTGGGCGAGACGCTGCTTTGGGTGTCGGGCGGCCTGCTGGAACTGCTGTTCCGGCT
GTTGGGCTGGATGGCCGAGCTGGCGCCCGCCTGGCAGCCGGTAGCTGCGCCGATCTGGGCGCTGGTGCTGGCGATGCTGG
GCGCACTCCTGCTGCTTGCGCCCGCTGGTGTCCCATTGCGTGCGCTGGGGTTGGCGATGTTCCTGCCGGTGTTCTGGCCG
ACAGTCCCGTTGCCCGCACCGGGCATGGCCGAGATCCGCGTGCTGGATGTGGGGCAGGGGCTGTCGGTGCTGATCCGTAC
GCGTAGCCAGGTCTGGCTCTACGACACCGGGGCGCGCAATGGCGATTTCGATATCGGCGAGCGCGTCGTGGTGCCGACGC
TGCGCAGCCTGGGTATCGGGCGCCTGGACGTGCTGATGCTCAGTCACGCGGACAACGATCACGCCGGCGGCGCCATGGCG
GTGAAGCGTTCGCTGCGGCCGGACCAGGTCATCAGTGGCGAGCCCGAGCGCTTGCCGGAGCAGTTGCAGGCCCGGCCTTG
TGGCATCGAGGAGTGGATAATCGATGGCGTTCGCCTCTCCAGCTGGGCCTGGGCAGGCGCCAGCGAGAGCAACGACCGCT
CCTGCGCGCTGGAAGTCGAGGCCAACGGCGAGCGCATCCTGCTCACCGGCGACCTGCCGCAACCGGCCGAGCTCGCCTGG
CTGGCGGCGCATCCGGGTGAGCGCGTCGACTGGCTGCTGGCCGGCCACCACGGCAGCCGCAGCTCTTCCGGGCCTGCCTT
CCTGCGAGCGATCCGGCCCTCCACCGCGATCATCTCCCGTGGCGCCAACAACCCCTATGGCCATCCGCACCCGTCGGTCG
TCGAGCGCTTCCGCACGCTGGGCATCCGGATTCAGGATACGGCGGAGCAGGGCGCGCTGACCCTGACGCTCGGTGCCCAT
GGCGAGGTCCGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-679)

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

• Competence protein (Competence) (196-460)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.217	97.554	0.568
comA	Ralstonia pseudosolanacearum GMI1000	35.463	100	0.37