Detailed information NTG0385182

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F0P95_RS16140
• Genome accession: NZ_CP043567
• Coordinates: 3537443..3538810 (+)
• Length: 455 a.a.
• NCBI ID: WP_182335075.1
• Uniprot ID: -
• Organism: Stenotrophomonas acidaminiphila strain T0-18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3532443..3543810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0P95_RS16120	-	3532516..3533199 (+)	684	WP_182335072.1	DUF3108 domain-containing protein	-
F0P95_RS16125	sucD	3533276..3534151 (-)	876	WP_182335073.1	succinate--CoA ligase subunit alpha	-
F0P95_RS16130	sucC	3534333..3535505 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
F0P95_RS16135	-	3535766..3537379 (+)	1614	WP_182335074.1	ATP-binding protein	-
F0P95_RS16140	pilR	3537443..3538810 (+)	1368	WP_182335075.1	sigma-54 dependent transcriptional regulator	Regulator
F0P95_RS16145	-	3539020..3540942 (-)	1923	WP_182335076.1	sensor histidine kinase	-
F0P95_RS16150	-	3540945..3543137 (-)	2193	WP_182335077.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48950.07 Da
• Isoelectric Point: 6.4260

>NTDB_id=385182 F0P95_RS16140 WP_182335075.1 3537443..3538810(+) (pilR) [Stenotrophomonas acidaminiphila strain T0-18]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGMVKHALELNNSERAAQPAAPESASRLLGGSQAMSDLRATIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPVPRCDAGGAAEEASTD
TDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=385182 F0P95_RS16140 WP_182335075.1 3537443..3538810(+) (pilR) [Stenotrophomonas acidaminiphila strain T0-18]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACTCTCGGCCGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCACCCGCGTACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAACTCAACAACAGCGAGCGCGCGGCGCAGCCCGCGGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGGGTCGCAGGCGATGTCCGACCTGCGCGCCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTGGCGCGCACCATCCACGACCAGGGCGCACG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATTCCCGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCATGCGGACAAACCGGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTACGACCGGTCGGCTCGGC
CACCGAAGTGCCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTACCGCCGCTGCGCGAGCGGCGTGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCGCCCTCGGCACTGGATGC
CCTGGGCGGCTATGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGGTCCCGCGCTGCGATGCCGGCGGCGCGGCCGAGGAAGCTTCGACCGAC
ACCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCGGCGCAGCTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAACTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.938	99.341	0.635
pilR	Acinetobacter baumannii strain A118	49.024	100	0.497
luxO	Vibrio cholerae strain A1552	36.937	97.582	0.36