Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EVS87_RS16825 Genome accession   NZ_CP043559
Coordinates   3218360..3219049 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain CHB19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3213360..3224049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS16790 (EVS87_016790) - 3213447..3213929 (-) 483 WP_007499977.1 flagellar protein FlgN -
  EVS87_RS16795 (EVS87_016795) flgM 3213948..3214211 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  EVS87_RS16800 (EVS87_016800) - 3214291..3214710 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  EVS87_RS16805 (EVS87_016805) - 3214767..3215489 (-) 723 WP_285891443.1 ComF family protein -
  EVS87_RS16810 (EVS87_016810) - 3215450..3215743 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  EVS87_RS16815 (EVS87_016815) comFA 3215808..3217187 (-) 1380 WP_149712602.1 DEAD/DEAH box helicase Machinery gene
  EVS87_RS16820 (EVS87_016820) - 3217307..3218149 (-) 843 WP_024719242.1 DegV family protein -
  EVS87_RS16825 (EVS87_016825) degU 3218360..3219049 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  EVS87_RS16830 (EVS87_016830) degS 3219113..3220288 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  EVS87_RS16835 (EVS87_016835) - 3220510..3221178 (+) 669 WP_017357860.1 YigZ family protein -
  EVS87_RS16840 (EVS87_016840) - 3221163..3222260 (+) 1098 WP_024719244.1 LCP family protein -
  EVS87_RS16845 (EVS87_016845) - 3222298..3223365 (-) 1068 WP_024719245.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=385134 EVS87_RS16825 WP_008348273.1 3218360..3219049(-) (degU) [Bacillus altitudinis strain CHB19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=385134 EVS87_RS16825 WP_008348273.1 3218360..3219049(-) (degU) [Bacillus altitudinis strain CHB19]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment