Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HGK51_RS01165 Genome accession   NZ_CP051511
Coordinates   236710..238056 (+) Length   448 a.a.
NCBI ID   WP_012443287.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231710..243056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGK51_RS01135 (HGK51_01130) - 231867..232697 (+) 831 WP_202171156.1 beta-1,4-N-acetylgalactosamyltransferase -
  HGK51_RS01140 (HGK51_01135) - 232713..233264 (-) 552 WP_041199594.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  HGK51_RS01145 (HGK51_01140) - 233409..233870 (+) 462 WP_001874089.1 helix-turn-helix domain-containing protein -
  HGK51_RS01150 (HGK51_01145) - 234043..235206 (+) 1164 WP_000941704.1 NifS family cysteine desulfurase -
  HGK51_RS01155 (HGK51_01150) - 235228..236208 (+) 981 WP_001051942.1 iron-sulfur cluster assembly scaffold protein NifU -
  HGK51_RS01160 (HGK51_01155) - 236364..236597 (+) 234 WP_000450352.1 ribbon-helix-helix domain-containing protein -
  HGK51_RS01165 (HGK51_01160) radA 236710..238056 (+) 1347 WP_012443287.1 DNA repair protein RadA Machinery gene
  HGK51_RS01170 (HGK51_01165) msrB 238136..239215 (+) 1080 WP_202170889.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HGK51_RS01175 (HGK51_01170) - 239346..239564 (+) 219 WP_202170890.1 DUF3519 domain-containing protein -
  HGK51_RS01180 (HGK51_01175) - 239685..240518 (-) 834 WP_000392956.1 sulfite exporter TauE/SafE family protein -
  HGK51_RS01185 (HGK51_01180) - 240724..242799 (-) 2076 WP_272928520.1 SabA family sialic acid-binding adhesin -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49482.38 Da        Isoelectric Point: 7.8021

>NTDB_id=385133 HGK51_RS01165 WP_012443287.1 236710..238056(+) (radA) [Helicobacter pylori strain ASHA-006]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNTLKNPIPKAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAVFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSQEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=385133 HGK51_RS01165 WP_012443287.1 236710..238056(+) (radA) [Helicobacter pylori strain ASHA-006]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTAGGCAAGTGCGTTCAATG
CAACGCATGGGAAAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACACGCTTAAAAACCCGATCCCAAAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTGATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGATTGCTAAAGGAGGGTTGTATTTGGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAATCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGTGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAACTGGCCTGTGATTAAGGCGAAT
ATTGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCACCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTAGCCAAAACAAGAAATATTGCTGTTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGAGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAGTTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAAAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCTCAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGGATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GCATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGCCAAAAAACCTCGATCAAATGCTATGAAGCCAATGCGGTGGGTAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

46.714

95.089

0.444
  radA Streptococcus pneumoniae Rx1

46.714

95.089

0.444
  radA Streptococcus pneumoniae D39

46.714

95.089

0.444
  radA Streptococcus pneumoniae TIGR4

46.714

95.089

0.444
  radA Streptococcus mitis SK321

46.714

95.089

0.444
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.604

95.313

0.444
  radA Streptococcus mitis NCTC 12261

46.479

95.089

0.442

Multiple sequence alignment