Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EVS87_RS16815 Genome accession   NZ_CP043559
Coordinates   3215808..3217187 (-) Length   459 a.a.
NCBI ID   WP_149712602.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3210808..3222187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS16780 (EVS87_016780) flgL 3210991..3211902 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  EVS87_RS16785 (EVS87_016785) flgK 3211911..3213431 (-) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  EVS87_RS16790 (EVS87_016790) - 3213447..3213929 (-) 483 WP_007499977.1 flagellar protein FlgN -
  EVS87_RS16795 (EVS87_016795) flgM 3213948..3214211 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  EVS87_RS16800 (EVS87_016800) - 3214291..3214710 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  EVS87_RS16805 (EVS87_016805) - 3214767..3215489 (-) 723 WP_285891443.1 ComF family protein -
  EVS87_RS16810 (EVS87_016810) - 3215450..3215743 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  EVS87_RS16815 (EVS87_016815) comFA 3215808..3217187 (-) 1380 WP_149712602.1 DEAD/DEAH box helicase Machinery gene
  EVS87_RS16820 (EVS87_016820) - 3217307..3218149 (-) 843 WP_024719242.1 DegV family protein -
  EVS87_RS16825 (EVS87_016825) degU 3218360..3219049 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  EVS87_RS16830 (EVS87_016830) degS 3219113..3220288 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  EVS87_RS16835 (EVS87_016835) - 3220510..3221178 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52495.09 Da        Isoelectric Point: 9.9664

>NTDB_id=385133 EVS87_RS16815 WP_149712602.1 3215808..3217187(-) (comFA) [Bacillus altitudinis strain CHB19]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFSESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=385133 EVS87_RS16815 WP_149712602.1 3215808..3217187(-) (comFA) [Bacillus altitudinis strain CHB19]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGACCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
ATACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment