Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EVS87_RS08880 Genome accession   NZ_CP043559
Coordinates   1733355..1733735 (+) Length   126 a.a.
NCBI ID   WP_235683811.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CHB19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1728355..1738735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS08870 (EVS87_008870) - 1730078..1730986 (+) 909 WP_035700922.1 trypsin-like serine peptidase -
  EVS87_RS08875 (EVS87_008875) - 1731133..1733127 (+) 1995 WP_135008845.1 glycosyltransferase family 39 protein -
  EVS87_RS08880 (EVS87_008880) nucA/comI 1733355..1733735 (+) 381 WP_235683811.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  EVS87_RS08885 (EVS87_008885) - 1733879..1734727 (+) 849 WP_017359585.1 STAS domain-containing protein -
  EVS87_RS08890 (EVS87_008890) - 1734760..1735302 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  EVS87_RS08895 (EVS87_008895) - 1735599..1736042 (+) 444 WP_135008843.1 hypothetical protein -
  EVS87_RS08900 (EVS87_008900) lexA 1736090..1736710 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  EVS87_RS08905 (EVS87_008905) yneA 1736870..1737181 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  EVS87_RS08910 (EVS87_008910) - 1737199..1737846 (+) 648 WP_017359583.1 recombinase family protein -
  EVS87_RS08915 (EVS87_008915) - 1737916..1738146 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13774.38 Da        Isoelectric Point: 7.8980

>NTDB_id=385111 EVS87_RS08880 WP_235683811.1 1733355..1733735(+) (nucA/comI) [Bacillus altitudinis strain CHB19]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGYDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=385111 EVS87_RS08880 WP_235683811.1 1733355..1733735(+) (nucA/comI) [Bacillus altitudinis strain CHB19]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTATGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.664

94.444

0.563

Multiple sequence alignment