Detailed information NTG0385111

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HG557_RS04325
• Genome accession: NZ_CP051510
• Coordinates: 906575..907126 (-)
• Length: 183 a.a.
• NCBI ID: WP_202132512.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 901575..912126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG557_RS04310 (HG557_04305)	ruvC	902040..902513 (-)	474	WP_202147950.1	crossover junction endodeoxyribonuclease RuvC	-
HG557_RS04315 (HG557_04310)	-	902645..903376 (+)	732	WP_000646758.1	NYN domain-containing protein	-
HG557_RS04320 (HG557_04315)	-	903881..906484 (-)	2604	WP_237393364.1	DUF3519 domain-containing protein	-
HG557_RS04325 (HG557_04320)	ruvA	906575..907126 (-)	552	WP_202132512.1	Holliday junction branch migration protein RuvA	Machinery gene
HG557_RS04330 (HG557_04325)	-	907152..908990 (-)	1839	WP_202132513.1	FapA family protein	-
HG557_RS04335 (HG557_04330)	murJ	909083..910543 (+)	1461	WP_202132514.1	murein biosynthesis integral membrane protein MurJ	-
HG557_RS04340 (HG557_04335)	cysS	910544..911941 (+)	1398	WP_202132515.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20233.90 Da
• Isoelectric Point: 9.4135

>NTDB_id=385111 HG557_RS04325 WP_202132512.1 906575..907126(-) (ruvA) [Helicobacter pylori strain ASHA-008]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETKPMHNEVFLALESLGFKSTEINKV
LKTLKPHISTEAAIKEALQQLRS

Nucleotide

• Length: 552 bp

>NTDB_id=385111 HG557_RS04325 WP_202132512.1 906575..907126(-) (ruvA) [Helicobacter pylori strain ASHA-008]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCCGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTGCAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAGCATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACAAAACCCATGCATAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCACTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATATCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (140-181)

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	92.896	100	0.929
ruvA	Streptococcus pneumoniae TIGR4	33.846	100	0.361
ruvA	Streptococcus pneumoniae R6	33.846	100	0.361
ruvA	Streptococcus pneumoniae D39	33.846	100	0.361