Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   F0M21_RS16770 Genome accession   NZ_CP043546
Coordinates   3376773..3377462 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SYP-B637     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371773..3382462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0M21_RS16735 (F0M21_16735) - 3371971..3372453 (-) 483 WP_003151394.1 flagellar protein FlgN -
  F0M21_RS16740 (F0M21_16740) flgM 3372468..3372734 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  F0M21_RS16745 (F0M21_16745) - 3372804..3373223 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  F0M21_RS16750 (F0M21_16750) comFC 3373297..3373986 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  F0M21_RS16755 (F0M21_16755) - 3373992..3374276 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  F0M21_RS16760 (F0M21_16760) comFA 3374334..3375719 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  F0M21_RS16765 (F0M21_16765) - 3375827..3376675 (-) 849 WP_003151387.1 DegV family protein -
  F0M21_RS16770 (F0M21_16770) degU 3376773..3377462 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F0M21_RS16775 (F0M21_16775) degS 3377539..3378702 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  F0M21_RS16780 (F0M21_16780) - 3378925..3379572 (+) 648 WP_007614107.1 YigZ family protein -
  F0M21_RS16785 (F0M21_16785) - 3379577..3380797 (+) 1221 WP_012118574.1 LCP family protein -
  F0M21_RS16790 (F0M21_16790) - 3380896..3381972 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=385003 F0M21_RS16770 WP_003219701.1 3376773..3377462(-) (degU) [Bacillus velezensis strain SYP-B637]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=385003 F0M21_RS16770 WP_003219701.1 3376773..3377462(-) (degU) [Bacillus velezensis strain SYP-B637]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment