Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   F0M21_RS16750 Genome accession   NZ_CP043546
Coordinates   3373297..3373986 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYP-B637     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368297..3378986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0M21_RS16715 (F0M21_16715) fliW 3368388..3368819 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  F0M21_RS16720 (F0M21_16720) - 3368849..3369418 (-) 570 WP_023357152.1 DUF6470 family protein -
  F0M21_RS16725 (F0M21_16725) flgL 3369509..3370426 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  F0M21_RS16730 (F0M21_16730) flgK 3370438..3371955 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  F0M21_RS16735 (F0M21_16735) - 3371971..3372453 (-) 483 WP_003151394.1 flagellar protein FlgN -
  F0M21_RS16740 (F0M21_16740) flgM 3372468..3372734 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  F0M21_RS16745 (F0M21_16745) - 3372804..3373223 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  F0M21_RS16750 (F0M21_16750) comFC 3373297..3373986 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  F0M21_RS16755 (F0M21_16755) - 3373992..3374276 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  F0M21_RS16760 (F0M21_16760) comFA 3374334..3375719 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  F0M21_RS16765 (F0M21_16765) - 3375827..3376675 (-) 849 WP_003151387.1 DegV family protein -
  F0M21_RS16770 (F0M21_16770) degU 3376773..3377462 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F0M21_RS16775 (F0M21_16775) degS 3377539..3378702 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=385001 F0M21_RS16750 WP_197197403.1 3373297..3373986(-) (comFC) [Bacillus velezensis strain SYP-B637]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=385001 F0M21_RS16750 WP_197197403.1 3373297..3373986(-) (comFC) [Bacillus velezensis strain SYP-B637]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment