Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FZ025_RS04595 Genome accession   NZ_CP043476
Coordinates   1000963..1002351 (+) Length   462 a.a.
NCBI ID   WP_104557687.1    Uniprot ID   A0A2S7F2Z8
Organism   Xanthomonas hyacinthi strain CFBP 1156     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 995963..1007351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FZ025_RS04580 (FZ025_04630) sucD 996821..997693 (-) 873 WP_104557683.1 succinate--CoA ligase subunit alpha -
  FZ025_RS04585 (FZ025_04635) sucC 997867..999030 (-) 1164 WP_046978047.1 ADP-forming succinate--CoA ligase subunit beta -
  FZ025_RS04590 (FZ025_04640) - 999274..1000887 (+) 1614 WP_104557685.1 HAMP domain-containing sensor histidine kinase -
  FZ025_RS04595 (FZ025_04645) pilR 1000963..1002351 (+) 1389 WP_104557687.1 sigma-54 dependent transcriptional regulator Regulator
  FZ025_RS04600 (FZ025_04650) - 1002524..1002820 (+) 297 WP_046978042.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FZ025_RS04605 (FZ025_04655) - 1002823..1003116 (+) 294 WP_046978041.1 addiction module antidote protein -
  FZ025_RS04610 (FZ025_04660) pilB 1003144..1004880 (-) 1737 WP_046978045.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FZ025_RS04615 (FZ025_04665) - 1005088..1005378 (+) 291 WP_046978040.1 nucleotidyltransferase family protein -
  FZ025_RS04620 (FZ025_04670) - 1005375..1005746 (+) 372 WP_046978039.1 DUF86 domain-containing protein -
  FZ025_RS04625 (FZ025_04675) - 1005882..1006577 (+) 696 WP_104557689.1 transposase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49779.16 Da        Isoelectric Point: 6.5829

>NTDB_id=384414 FZ025_RS04595 WP_104557687.1 1000963..1002351(+) (pilR) [Xanthomonas hyacinthi strain CFBP 1156]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSVDLAVEALKAGAFDFVSKPVDIHVLRGLVRHALELNNSERAAPPAAPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAASEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRVTPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPTYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=384414 FZ025_RS04595 WP_104557687.1 1000963..1002351(+) (pilR) [Xanthomonas hyacinthi strain CFBP 1156]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACTGCCGCCAACCTCGCCGAGGCCCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCGTGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAGGCACGCGCTGGAACTCAACAACAGCGAGCGCGCCGCACCGCCGGCGGCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCGAGCGAAGTGCCGACCGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCATGGCCGGGTCACCCCGCTATTGTCGCCATCGGCATTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCCCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCCACCTCCTCCGCCCTGCCCACCTACATCGAGCAGCTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCGGCGCAGCTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S7F2Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.186

100

0.472

Multiple sequence alignment