Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FYK34_RS18165 Genome accession   NZ_CP043473
Coordinates   3839578..3840900 (+) Length   440 a.a.
NCBI ID   WP_149298928.1    Uniprot ID   A0A5C1DL19
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3829198..3843568 3839578..3840900 within 0


Gene organization within MGE regions


Location: 3829198..3843568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS18140 (FYK34_18140) - 3829198..3831807 (+) 2610 WP_168209798.1 TonB-dependent siderophore receptor -
  FYK34_RS18145 (FYK34_18145) - 3832474..3835038 (+) 2565 WP_149298924.1 TonB-dependent receptor -
  FYK34_RS18150 (FYK34_18150) - 3835125..3835586 (-) 462 WP_149298926.1 GNAT family N-acetyltransferase -
  FYK34_RS18155 (FYK34_18155) parC 3835684..3838029 (+) 2346 WP_407923586.1 DNA topoisomerase IV subunit A -
  FYK34_RS18160 (FYK34_18160) - 3838029..3839585 (+) 1557 WP_174774531.1 PAS domain-containing sensor histidine kinase -
  FYK34_RS18165 (FYK34_18165) pilR 3839578..3840900 (+) 1323 WP_149298928.1 sigma-54 dependent transcriptional regulator Regulator
  FYK34_RS18170 (FYK34_18170) - 3840954..3842252 (-) 1299 WP_149298930.1 hypothetical protein -
  FYK34_RS18175 (FYK34_18175) - 3842252..3843568 (-) 1317 WP_149298932.1 hypothetical protein -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 48046.20 Da        Isoelectric Point: 5.4385

>NTDB_id=384399 FYK34_RS18165 WP_149298928.1 3839578..3840900(+) (pilR) [Chromobacterium paludis strain IIBBL 257-1]
MTKTPLRVLIVDDEPDIRELLELTLLKMGLAPVCAGSVAQAKTALATGRFDLALTDMRLPDGEGLEVVRHIGEAGLDLPV
AVITAYGSADNAVLAMKAGAFDYLQKPVSLAQLRSLVKSALKVEAPSAKPAAQQRLLGESPAIQEVLRLVDKLARSQAAV
YIGGESGTGKEQAARLIHELGPRAGKPFVAVNCGAIPESLMESEFFGYRKGAFTGADAERDGFFQQAQGGTLFLDEVADL
PLAMQVKLLRAIQEKTVRKLGSAQEEAVDARIICATHQDLAAKVEDGGFRQDLYYRLNVLPLRMPPLRELREDIPLFAER
LLQRFAGQGPAPQLTADARQALQDYAYPGNFRELENILERAVALAAAPALSREDLQLTPCAEYSPEPGSDEPLQDYLDRV
EREAIVKALEATRYNRTQAAKRLGVTFRSLRYRMERLGVK

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=384399 FYK34_RS18165 WP_149298928.1 3839578..3840900(+) (pilR) [Chromobacterium paludis strain IIBBL 257-1]
ATGACTAAAACCCCCCTGCGCGTATTGATCGTCGACGACGAACCGGACATCCGCGAGCTATTGGAGCTGACGCTGCTGAA
AATGGGCCTGGCCCCGGTGTGCGCCGGCAGCGTGGCTCAGGCCAAAACGGCGCTGGCGACAGGCCGCTTCGACCTGGCCT
TGACCGATATGCGGCTGCCGGACGGCGAAGGCCTGGAAGTGGTGCGCCACATCGGCGAGGCCGGGCTGGACCTGCCGGTG
GCGGTGATCACCGCCTACGGCAGCGCCGACAACGCGGTGCTGGCGATGAAGGCCGGCGCTTTCGACTACCTGCAGAAGCC
GGTCAGCCTGGCCCAGCTGCGCAGCCTGGTCAAATCCGCCCTGAAAGTGGAGGCCCCGTCCGCCAAGCCTGCTGCGCAAC
AGCGGCTGCTGGGCGAATCACCGGCCATCCAGGAGGTGCTGCGGCTGGTGGACAAGCTGGCGCGCAGCCAGGCGGCGGTG
TATATCGGCGGCGAATCCGGCACCGGCAAGGAGCAGGCGGCGCGGCTGATCCACGAGCTGGGCCCGCGCGCCGGCAAGCC
CTTTGTCGCTGTCAATTGCGGCGCCATCCCGGAAAGCCTGATGGAGAGCGAATTCTTCGGCTACCGCAAGGGCGCCTTCA
CCGGCGCCGACGCCGAACGCGACGGATTCTTCCAGCAGGCCCAGGGCGGCACGCTGTTCCTGGACGAGGTGGCGGACCTG
CCGCTGGCCATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAAACCGTGCGCAAGCTGGGCAGCGCTCAAGAGGAAGC
GGTGGACGCGCGCATCATCTGCGCCACCCACCAGGACCTGGCCGCCAAGGTGGAGGACGGCGGCTTCCGCCAGGACCTGT
ACTACCGCCTCAATGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAGCTGCGCGAAGACATCCCGCTGTTCGCCGAACGG
CTGCTGCAACGCTTCGCTGGCCAGGGTCCGGCGCCGCAGCTCACCGCCGACGCCCGCCAGGCGCTGCAGGACTACGCCTA
TCCCGGCAACTTCCGCGAACTGGAAAATATATTAGAGCGCGCCGTGGCCCTGGCCGCCGCGCCCGCGCTATCGCGCGAAG
ACCTGCAACTGACGCCTTGCGCCGAATACAGCCCGGAGCCGGGCAGCGACGAACCGCTGCAAGACTACCTGGACCGCGTG
GAGCGCGAAGCCATCGTCAAGGCGCTGGAAGCCACCCGTTACAACCGCACCCAGGCGGCCAAACGGCTGGGGGTGACGTT
CCGGTCATTGCGGTATCGGATGGAGAGGTTGGGGGTGAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(397-436)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DL19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60

100

0.6
  pilR Acinetobacter baumannii strain A118

45.852

100

0.477
  luxO Vibrio cholerae strain A1552

39.552

91.364

0.361

Multiple sequence alignment