Detailed information NTG0383972

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CLCT_RS01945
• Genome accession: NZ_CP043426
• Coordinates: 363797..365188 (+)
• Length: 463 a.a.
• NCBI ID: WP_149062098.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus strain LMG 21009
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 358797..370188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLCT_RS01930 (CLCT_0383)	-	359182..359826 (+)	645	WP_149062096.1	HAD family hydrolase	-
CLCT_RS01935 (CLCT_0384)	nifJ	359944..363498 (+)	3555	WP_149062097.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CLCT_RS01940 (CLCT_0385)	-	363565..363825 (+)	261	WP_148308367.1	hypothetical protein	-
CLCT_RS01945 (CLCT_0386)	ctsD	363797..365188 (+)	1392	WP_149062098.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CLCT_RS01950 (CLCT_0387)	-	365169..365498 (+)	330	WP_052239429.1	transformation system, membrane protein CtsX	-
CLCT_RS01955 (CLCT_0388)	-	365491..366996 (+)	1506	WP_149062099.1	GspE/PulE family protein	-
CLCT_RS01960 (CLCT_0389)	-	366993..368153 (+)	1161	WP_149062100.1	type II secretion system F family protein	-
CLCT_RS01965 (CLCT_0390)	-	368150..368902 (-)	753	WP_149062101.1	TSUP family transporter	-
CLCT_RS01970 (CLCT_0391)	-	368887..369636 (-)	750	WP_149062102.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52579.47 Da
• Isoelectric Point: 7.9605

>NTDB_id=383972 CLCT_RS01945 WP_149062098.1 363797..365188(+) (ctsD) [Campylobacter lari subsp. concheus strain LMG 21009]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGIKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=383972 CLCT_RS01945 WP_149062098.1 363797..365188(+) (ctsD) [Campylobacter lari subsp. concheus strain LMG 21009]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAACTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATCTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTATTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAAGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577