Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLCT_RS01590 Genome accession   NZ_CP043426
Coordinates   289689..290867 (+) Length   392 a.a.
NCBI ID   WP_149062054.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain LMG 21009     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 284689..295867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLCT_RS01575 (CLCT_0314) - 284901..286460 (+) 1560 WP_149062051.1 aldolase catalytic domain-containing protein -
  CLCT_RS01580 (CLCT_0315) - 286712..287713 (+) 1002 WP_149062052.1 glycosyltransferase -
  CLCT_RS01585 (CLCT_0316) - 287707..289692 (+) 1986 WP_149062053.1 capsular polysaccharide biosynthesis protein -
  CLCT_RS01590 (CLCT_0317) kpsS 289689..290867 (+) 1179 WP_149062054.1 capsule biosynthesis protein Regulator
  CLCT_RS07705 (CLCT_0318) - 290864..292372 (-) 1509 WP_211352619.1 SGNH/GDSL hydrolase family protein -
  CLCT_RS01600 (CLCT_0319) - 292536..293666 (+) 1131 WP_149062055.1 DUF829 domain-containing protein -
  CLCT_RS01605 (CLCT_0320) - 293676..295049 (+) 1374 WP_149062056.1 cytochrome P450 -
  CLCT_RS01610 (CLCT_0321) - 295046..295399 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46337.88 Da        Isoelectric Point: 10.1617

>NTDB_id=383971 CLCT_RS01590 WP_149062054.1 289689..290867(+) (kpsS) [Campylobacter lari subsp. concheus strain LMG 21009]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPKAKVYKVNFNGGDFLFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
ILMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWFCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKSTEKFIEEVIVSFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=383971 CLCT_RS01590 WP_149062054.1 289689..290867(+) (kpsS) [Campylobacter lari subsp. concheus strain LMG 21009]
ATGAATTTAAGTAAGAAATTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGGCCCGTGGGTGGATTTTTTCG
TAAAATTGCTACAAAAATCCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTATTTTATCCTTTTA
AAAGTATTAATTATACCAAAAGCTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAGTTCATGAGATAGCCATCAGTGTAGCCAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTACATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCGACCCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCTTTTGCTTCATTTTTGTATTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTGCCTTGGTTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGATACTCAACTATCCCATCACTAT
AAAAAAAGTACAGAAAAATTTATAGAAGAAGTGATTGTTTCTTTTGCTAATCATGCTAAAGCAAAATCCTATCTAGTTTT
TAAGCATCATCCTATGGATCGTGGTTATAGGGATTACACAAAACTTATAGAAGATTTGAGCTTAAAATACAATGTTGAGG
GTAGAATTTTATATGTACATGACTTACACTTACCTACACTCTTAATCAATGCAAGAGGTACTATAGTCATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAACAGCCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGTTTAACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAGTGTAGAGCATATAAGCCTGATGCGGTTTTGCACGCTAAATTTAGAAATT
ATGTGATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.532

100

0.63

Multiple sequence alignment