Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BSR23_RS02170 | Genome accession | NZ_CP043421 |
| Coordinates | 407397..407975 (+) | Length | 192 a.a. |
| NCBI ID | WP_053815467.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain MVP1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 402397..412975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSR23_RS02155 (BSR23_002155) | oxyR | 402719..403627 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| BSR23_RS02160 (BSR23_002160) | - | 403684..406254 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| BSR23_RS02165 (BSR23_002165) | pilM | 406397..407413 (+) | 1017 | WP_029862413.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BSR23_RS02170 (BSR23_002170) | pilN | 407397..407975 (+) | 579 | WP_053815467.1 | PilN domain-containing protein | Machinery gene |
| BSR23_RS02175 (BSR23_002175) | pilO | 407968..408561 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BSR23_RS02180 (BSR23_002180) | pilP | 408551..409066 (+) | 516 | WP_025554074.1 | pilus assembly protein PilP | Machinery gene |
| BSR23_RS02185 (BSR23_002185) | pilQ | 409098..410846 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| BSR23_RS02190 (BSR23_002190) | aroK | 411035..411553 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| BSR23_RS02195 (BSR23_002195) | aroB | 411585..412685 (+) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22472.97 Da Isoelectric Point: 6.9944
>NTDB_id=383905 BSR23_RS02170 WP_053815467.1 407397..407975(+) (pilN) [Vibrio parahaemolyticus strain MVP1]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVAFGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVAFGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=383905 BSR23_RS02170 WP_053815467.1 407397..407975(+) (pilN) [Vibrio parahaemolyticus strain MVP1]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTTGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACAGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTTGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACAGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.812 |
100 |
0.828 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |