Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYAN7822_RS14770 Genome accession   NC_014501
Coordinates   3350068..3350445 (-) Length   125 a.a.
NCBI ID   WP_013323070.1    Uniprot ID   -
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3345068..3355445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS14755 (Cyan7822_3019) grxC 3346142..3346399 (-) 258 WP_013323067.1 glutaredoxin 3 -
  CYAN7822_RS14760 (Cyan7822_3020) - 3346444..3347244 (+) 801 WP_013323068.1 PD-(D/E)XK nuclease family protein -
  CYAN7822_RS14765 (Cyan7822_3021) - 3347316..3349859 (-) 2544 WP_083786865.1 serine protease -
  CYAN7822_RS14770 (Cyan7822_3022) pilH 3350068..3350445 (-) 378 WP_013323070.1 response regulator Machinery gene
  CYAN7822_RS14775 (Cyan7822_3023) - 3350746..3351564 (-) 819 WP_013323071.1 DUF1206 domain-containing protein -
  CYAN7822_RS14780 (Cyan7822_3024) - 3352134..3352733 (-) 600 WP_013323072.1 Crp/Fnr family transcriptional regulator -
  CYAN7822_RS14785 (Cyan7822_3026) - 3353478..3354725 (-) 1248 WP_013323074.1 sodium:proton antiporter -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14355.71 Da        Isoelectric Point: 4.8778

>NTDB_id=38385 CYAN7822_RS14770 WP_013323070.1 3350068..3350445(-) (pilH) [Gloeothece verrucosa PCC 7822]
MITVLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKEVPDLVITDLIMPQMNGYELCRWIKNNPSTQDVPVLI
CSTKSEEFDRYWGMKQGADAYITKPFQPAEMLQTIKFLLQNRRKS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=38385 CYAN7822_RS14770 WP_013323070.1 3350068..3350445(-) (pilH) [Gloeothece verrucosa PCC 7822]
ATGATTACAGTTCTTATCGTCGATGATAGTCCGAGTCTGCGACAAATTCTCATAGAGCTTCTCCAAAAACGAGGAATTAA
TGTCCTAGAAGCAGCTAGTGGCATGGAAGCTCAAGAACAAATTCAAAAAGAGGTTCCTGATTTAGTGATCACTGATTTGA
TCATGCCTCAGATGAACGGCTACGAGTTGTGTCGTTGGATTAAAAATAATCCATCTACCCAAGATGTCCCCGTGTTAATT
TGTTCGACTAAAAGCGAAGAATTTGACCGTTACTGGGGAATGAAACAAGGCGCAGATGCTTATATTACTAAGCCTTTTCA
ACCAGCCGAAATGCTGCAAACGATCAAATTTTTGTTGCAAAATCGTCGAAAAAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.198

96.8

0.544
  micA Streptococcus pneumoniae Cp1015

40

96

0.384
  vicR Streptococcus mutans UA159

37.5

96

0.36

Multiple sequence alignment