Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYAN7822_RS05510 Genome accession   NC_014501
Coordinates   1240262..1240627 (-) Length   121 a.a.
NCBI ID   WP_013321245.1    Uniprot ID   E0UFM7
Organism   Gloeothece verrucosa PCC 7822     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235262..1245627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN7822_RS05495 - 1237652..1237840 (-) 189 WP_041933144.1 hypothetical protein -
  CYAN7822_RS05500 (Cyan7822_1129) - 1237917..1239305 (-) 1389 WP_013321243.1 IS4 family transposase -
  CYAN7822_RS05505 (Cyan7822_1130) - 1239681..1240235 (-) 555 WP_013321244.1 CheW domain-containing protein -
  CYAN7822_RS05510 (Cyan7822_1131) pilH 1240262..1240627 (-) 366 WP_013321245.1 response regulator Machinery gene
  CYAN7822_RS05515 (Cyan7822_1132) - 1240719..1241912 (-) 1194 WP_041933145.1 response regulator -
  CYAN7822_RS05520 (Cyan7822_1133) - 1242129..1242647 (-) 519 WP_013321247.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13340.54 Da        Isoelectric Point: 5.1860

>NTDB_id=38371 CYAN7822_RS05510 WP_013321245.1 1240262..1240627(-) (pilH) [Gloeothece verrucosa PCC 7822]
MGTALVIDDSLTEREIITHYLKQAGITVSTANSGEEALEKLNSQLPDLIVLDVVLPGRSGFEICRVLKAEAKTQKIPVIL
CSTKGSEMDKFWGLKQGADAYIPKPVDQQLLLRTVKQLLEF

Nucleotide


Download         Length: 366 bp        

>NTDB_id=38371 CYAN7822_RS05510 WP_013321245.1 1240262..1240627(-) (pilH) [Gloeothece verrucosa PCC 7822]
ATGGGTACTGCCTTAGTCATTGATGATTCTTTAACAGAACGCGAAATTATCACCCATTACCTGAAACAAGCAGGTATTAC
TGTGTCCACAGCCAATAGTGGAGAGGAAGCCTTAGAAAAACTTAATAGTCAACTGCCAGACTTAATTGTCTTGGATGTGG
TTTTGCCGGGTCGGAGTGGTTTTGAAATTTGTCGGGTCCTCAAAGCCGAAGCAAAAACCCAAAAAATTCCCGTCATTCTC
TGTTCTACAAAAGGGAGTGAAATGGATAAATTTTGGGGGCTGAAACAGGGTGCAGATGCCTACATCCCTAAACCAGTGGA
TCAGCAATTGTTGCTTCGTACCGTCAAGCAGCTTCTTGAATTTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0UFM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

51.261

98.347

0.504
  vicR Streptococcus mutans UA159

39.496

98.347

0.388
  micA Streptococcus pneumoniae Cp1015

38.655

98.347

0.38

Multiple sequence alignment