Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   FY406_RS06575 Genome accession   NZ_CP043405
Coordinates   1304337..1305338 (+) Length   333 a.a.
NCBI ID   WP_003087361.1    Uniprot ID   A0A7X9QFQ0
Organism   Streptococcus ratti strain ATCC 31377     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1299337..1310338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY406_RS06550 (FY406_06550) - 1300383..1300973 (+) 591 WP_003087348.1 CDP-archaeol synthase -
  FY406_RS10650 - 1301098..1301305 (-) 208 Protein_1228 hypothetical protein -
  FY406_RS10430 - 1301467..1301619 (-) 153 WP_003087352.1 hypothetical protein -
  FY406_RS06555 (FY406_06555) - 1301776..1302009 (-) 234 WP_003087355.1 hypothetical protein -
  FY406_RS06560 (FY406_06560) - 1302523..1302609 (+) 87 Protein_1231 IS3 family transposase -
  FY406_RS06565 (FY406_06565) - 1302599..1302841 (+) 243 Protein_1232 IS110 family transposase -
  FY406_RS06570 (FY406_06570) - 1303093..1304172 (-) 1080 WP_003087358.1 Xaa-Pro peptidase family protein -
  FY406_RS06575 (FY406_06575) ccpA 1304337..1305338 (+) 1002 WP_003087361.1 catabolite control protein A Regulator
  FY406_RS06580 (FY406_06580) - 1305446..1306909 (+) 1464 WP_003087364.1 alpha-amylase -
  FY406_RS06585 (FY406_06585) - 1307156..1308154 (+) 999 WP_003087366.1 glycosyltransferase -
  FY406_RS06590 (FY406_06590) - 1308156..1309490 (+) 1335 WP_003087368.1 glycosyltransferase family 4 protein -
  FY406_RS10545 (FY406_06595) - 1309569..1309753 (+) 185 Protein_1238 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36638.70 Da        Isoelectric Point: 5.7607

>NTDB_id=383588 FY406_RS06575 WP_003087361.1 1304337..1305338(+) (ccpA) [Streptococcus ratti strain ATCC 31377]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKLATQNAVDLLAKNHDKIAFVSGPLIDDINGKVRLSGYKEGLKNNKLSFKEGLVFEAQYKYQEGYNLAQRVINSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEIVTSDDSAITSYTRPNLTSISQPVYDLGAVAMRMLTKIMNKEELEEKEI
VLNHGITERGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=383588 FY406_RS06575 WP_003087361.1 1304337..1305338(+) (ccpA) [Streptococcus ratti strain ATCC 31377]
ATGAACACAGATGACACTATCACTATTTACGATGTTGCTCGGGAGGCCGGAGTATCTATGGCAACGGTCAGCCGCGTTGT
AAATGGCAATAAAAATGTAAAAGAAAATACTCGGAAAAAAGTTTTGGAAGTTATTGACCGTTTGGATTACCGGCCAAATG
CCGTGGCGCGTGGTTTAGCGAGTAAAAAGACAACTACCGTCGGTGTTGTGATTCCTAATATTGCCAATGCTTATTTTTCA
ATCTTAGCTAAGGGAATTGACGATATCGCAACGATGTATAAATATAATATTGTTCTTGCTTCAAGCGATGAGGATGATGA
TAAGGAAGTTAATGTTATCAATACTCTGTTTGCCAAACAGGTAGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCGGAATTTTCACGTTCGCGTACGCCGATTGTGCTGGCAGGAACAGTTGATCTTGAGCACCAATTGCCAAGT
GTCAATATTGATTATAAATTAGCTACTCAAAATGCAGTGGATTTGCTGGCTAAAAATCATGATAAGATTGCCTTTGTATC
GGGACCTCTTATTGATGATATTAATGGCAAGGTACGGCTTAGCGGCTATAAGGAAGGGCTTAAGAACAATAAGCTCAGTT
TCAAAGAAGGTCTTGTTTTTGAAGCGCAGTATAAATACCAAGAAGGCTACAATCTTGCTCAGCGGGTCATCAATTCAGGT
GCCACAGCTGCCTATGTTGCTGAAGATGAACTGGCTGCCGGTCTTTTAAACGGTCTCTTTGCTGCCGGCAAAAAAGTACC
GGAAGATTTTGAAATTGTTACCAGCGACGATTCTGCCATTACTTCCTATACCCGTCCGAATTTGACCTCTATCAGCCAGC
CTGTTTATGATTTGGGTGCTGTTGCCATGCGCATGCTGACCAAGATCATGAACAAGGAAGAGCTGGAAGAAAAAGAAATT
GTTCTTAATCATGGGATTACAGAAAGAGGAACAACTAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7X9QFQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

80.48

100

0.805

  ccpA Streptococcus pneumoniae D39

77.477

100

0.775

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.495

99.399

0.562


Multiple sequence alignment