Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HGI45_RS03060 | Genome accession | NZ_CP051292 |
| Coordinates | 663899..665092 (-) | Length | 397 a.a. |
| NCBI ID | WP_202137442.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ASHA-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 658899..670092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI45_RS03035 (HGI45_03030) | - | 658943..659461 (-) | 519 | WP_000760568.1 | hypothetical protein | - |
| HGI45_RS03040 (HGI45_03035) | - | 659458..660402 (-) | 945 | WP_000365304.1 | CpaF/VirB11 family protein | - |
| HGI45_RS03045 (HGI45_03040) | - | 660407..660682 (-) | 276 | WP_000883383.1 | hypothetical protein | - |
| HGI45_RS03050 (HGI45_03045) | - | 660700..661647 (-) | 948 | WP_202137440.1 | hypothetical protein | - |
| HGI45_RS03055 (HGI45_03050) | - | 661660..663915 (-) | 2256 | WP_202137441.1 | collagen-like protein | - |
| HGI45_RS03060 (HGI45_03055) | comB10 | 663899..665092 (-) | 1194 | WP_202137442.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HGI45_RS03065 (HGI45_03060) | - | 665089..666720 (-) | 1632 | WP_202137443.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| HGI45_RS03070 (HGI45_03065) | - | 666717..667883 (-) | 1167 | WP_202137444.1 | VirB8/TrbF family protein | - |
| HGI45_RS08025 | - | 667876..668010 (-) | 135 | WP_237389288.1 | type IV secretion system protein VirB7 | - |
| HGI45_RS03075 (HGI45_03070) | - | 668012..669709 (-) | 1698 | Protein_616 | FtsK/SpoIIIE domain-containing protein | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 44310.94 Da Isoelectric Point: 9.9916
>NTDB_id=383557 HGI45_RS03060 WP_202137442.1 663899..665092(-) (comB10) [Helicobacter pylori strain ASHA-003]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEILQISESKFPLSDYFFEEVKEEPKKEESPKTTTTPQAPTTANV
STNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNLKY
KDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIAWT
RIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLLMQ
LTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEILQISESKFPLSDYFFEEVKEEPKKEESPKTTTTPQAPTTANV
STNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNLKY
KDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIAWT
RIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLLMQ
LTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI
Nucleotide
Download Length: 1194 bp
>NTDB_id=383557 HGI45_RS03060 WP_202137442.1 663899..665092(-) (comB10) [Helicobacter pylori strain ASHA-003]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCCTTCAAATAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAAGCTCCAACTACTGCTAATGTT
TCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAACAACATAACACCCTTACGCATTTACA
ACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACACACGCC
TTAAACCCTTAGAGCCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTAAAATAT
AAAGACATTGGCACTAATGAGCATAAACTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAATCACGCC
TATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGGTGCTAA
TCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCTTGGACT
AGAATTATCACCCCTCAAGGTATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGGCTTAGT
AGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTTTAATAG
GAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTTATGCAA
CTCACCAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCCCATTAT
CATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGGAGGTTC
TAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCCTTCAAATAAGCGAGAGTAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAAGCTCCAACTACTGCTAATGTT
TCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAACAACATAACACCCTTACGCATTTACA
ACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACACACGCC
TTAAACCCTTAGAGCCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTAAAATAT
AAAGACATTGGCACTAATGAGCATAAACTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAATCACGCC
TATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGGTGCTAA
TCCCTAAAGGCTCTAAGGTTATAGGCTATTACAACAACGATAATCAAATCGGACAATACCGCTTAAACATTGCTTGGACT
AGAATTATCACCCCTCAAGGTATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGGCTTAGT
AGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTTTAATAG
GAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTTATGCAA
CTCACCAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCCCATTAT
CATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGGAGGTTC
TAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.061 |
99.244 |
0.537 |