Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FX981_RS10375 Genome accession   NZ_CP043404
Coordinates   2093944..2094633 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain PgKB20     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088944..2099633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS10355 (FX981_02078) - 2089632..2090699 (+) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  FX981_RS10360 (FX981_02079) - 2090733..2091830 (-) 1098 Protein_2005 LCP family protein -
  FX981_RS10365 (FX981_02080) - 2091815..2092483 (-) 669 WP_144666227.1 YigZ family protein -
  FX981_RS10370 (FX981_02081) degS 2092704..2093879 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  FX981_RS10375 (FX981_02082) degU 2093944..2094633 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  FX981_RS10380 (FX981_02083) - 2094849..2095691 (+) 843 WP_024423625.1 DegV family protein -
  FX981_RS10385 (FX981_02084) comFA 2095812..2097209 (+) 1398 WP_276507389.1 DEAD/DEAH box helicase Machinery gene
  FX981_RS10390 (FX981_02085) - 2097258..2097551 (+) 294 WP_025093967.1 late competence development ComFB family protein -
  FX981_RS19320 (FX981_02086) comFC 2097578..2098234 (+) 657 WP_244948474.1 ComF family protein Machinery gene
  FX981_RS10400 (FX981_02087) - 2098291..2098710 (+) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  FX981_RS10405 (FX981_02088) flgM 2098790..2099053 (+) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  FX981_RS10410 (FX981_02089) - 2099072..2099554 (+) 483 WP_149126229.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=383509 FX981_RS10375 WP_008348273.1 2093944..2094633(+) (degU) [Bacillus safensis strain PgKB20]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=383509 FX981_RS10375 WP_008348273.1 2093944..2094633(+) (degU) [Bacillus safensis strain PgKB20]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment