Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FX981_RS07455 Genome accession   NZ_CP043404
Coordinates   1501476..1501766 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain PgKB20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496476..1506766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS07440 (FX981_01491) - 1496659..1497861 (-) 1203 WP_044334281.1 G5 and 3D domain-containing protein -
  FX981_RS07445 (FX981_01492) - 1498106..1498873 (-) 768 WP_024425634.1 TatD family hydrolase -
  FX981_RS07450 (FX981_01493) metG 1498955..1500955 (-) 2001 WP_024427203.1 methionine--tRNA ligase -
  FX981_RS07455 (FX981_01494) abrB 1501476..1501766 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FX981_RS07460 (FX981_01495) rsmI 1501812..1502693 (-) 882 WP_024425632.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FX981_RS07465 (FX981_01496) - 1502668..1502967 (-) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  FX981_RS07470 (FX981_01497) - 1502954..1503697 (-) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FX981_RS07475 (FX981_01498) yabA 1503753..1504106 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  FX981_RS07480 (FX981_01499) - 1504121..1504948 (-) 828 WP_024425628.1 PSP1 domain-containing protein -
  FX981_RS07485 (FX981_01500) holB 1504951..1505940 (-) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  FX981_RS07490 (FX981_01501) - 1505952..1506392 (-) 441 WP_024425626.1 YaaR family protein -
  FX981_RS07495 (FX981_01502) - 1506405..1506734 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=383500 FX981_RS07455 WP_087975202.1 1501476..1501766(+) (abrB) [Bacillus safensis strain PgKB20]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=383500 FX981_RS07455 WP_087975202.1 1501476..1501766(+) (abrB) [Bacillus safensis strain PgKB20]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGCGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment