Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   FX981_RS07690 Genome accession   NZ_CP043404
Coordinates   1544894..1546006 (-) Length   370 a.a.
NCBI ID   WP_041105878.1    Uniprot ID   A0AAP7UIW5
Organism   Bacillus safensis strain PgKB20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539894..1551006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX981_RS07675 (FX981_01537) gyrA 1539920..1542424 (-) 2505 WP_024424078.1 DNA gyrase subunit A -
  FX981_RS07680 (FX981_01538) gyrB 1542657..1544573 (-) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FX981_RS07685 (FX981_01539) remB 1544631..1544876 (-) 246 WP_056766786.1 extracellular matrix regulator RemB -
  FX981_RS07690 (FX981_01540) recF 1544894..1546006 (-) 1113 WP_041105878.1 DNA replication/repair protein RecF Machinery gene
  FX981_RS07695 (FX981_01541) yaaA 1546023..1546238 (-) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  FX981_RS07700 (FX981_01542) dnaN 1546389..1547525 (-) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  FX981_RS07705 (FX981_01543) dnaA 1547722..1549062 (-) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  FX981_RS07710 rpmH 1549683..1549817 (+) 135 WP_073208224.1 50S ribosomal protein L34 -
  FX981_RS07715 (FX981_01544) rnpA 1549896..1550255 (+) 360 WP_024427652.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3663

>NTDB_id=383502 FX981_RS07690 WP_041105878.1 1544894..1546006(-) (recF) [Bacillus safensis strain PgKB20]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=383502 FX981_RS07690 WP_041105878.1 1544894..1546006(-) (recF) [Bacillus safensis strain PgKB20]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATCGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATTGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment