Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SP670_RS07980 Genome accession   NC_014498
Coordinates   1504952..1506910 (-) Length   652 a.a.
NCBI ID   WP_000748890.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 670-6B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499952..1511910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS07950 (SP670_1604) - 1500674..1501840 (-) 1167 WP_000521362.1 MalY/PatB family protein -
  SP670_RS07955 (SP670_1605) - 1501848..1502942 (-) 1095 WP_000031974.1 cystathionine gamma-synthase -
  SP670_RS13570 - 1503100..1503821 (-) 722 Protein_1531 ABC transporter ATP-binding protein -
  SP670_RS13575 (SP670_1608) - 1503846..1504517 (-) 672 WP_230400241.1 ABC transporter ATP-binding protein -
  SP670_RS07975 (SP670_1609) - 1504547..1504780 (-) 234 WP_001820350.1 hypothetical protein -
  SP670_RS07980 (SP670_1610) amiA 1504952..1506910 (-) 1959 WP_000748890.1 peptide ABC transporter substrate-binding protein Regulator
  SP670_RS07985 (SP670_1612) - 1507114..1508736 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  SP670_RS07990 (SP670_1613) - 1508842..1510287 (+) 1446 WP_000590298.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SP670_RS07995 (SP670_1614) - 1510330..1510527 (-) 198 WP_000051189.1 CsbD family protein -
  SP670_RS08000 (SP670_1615) - 1510628..1511277 (-) 650 Protein_1538 DUF1803 domain-containing protein -
  SP670_RS08005 (SP670_1616) - 1511261..1511773 (-) 513 WP_000892251.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72848.29 Da        Isoelectric Point: 4.9016

>NTDB_id=38299 SP670_RS07980 WP_000748890.1 1504952..1506910(-) (amiA) [Streptococcus pneumoniae 670-6B]
MKKSKSKYLTLAGLVLGTGVLLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGI
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAFDRTSYGAQSEGKEGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADGQDPYYNPEKAKAKFAEAKKELEAKGVQFPIHLDKTVEVTDKVGIQGVSSIKQSIESVLGSDNVVIDIQQLTSDEFDS
SGYFAQTAAQKDYDLYHGGWGPDYQDPSTYLDILSVKSGGMLQNFGLEPGEVNEKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYADIQAWLIDSSLVLPSVSRGGTPSLRRTVPFAGAYGLTGTKGVESYKYLKVQDKIVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=38299 SP670_RS07980 WP_000748890.1 1504952..1506910(-) (amiA) [Streptococcus pneumoniae 670-6B]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAGTTTTATTGAGCGCGTGTGGAAA
TTCTAGCACTGCATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCACCTGTAACTGCCCAGGATTTTGTGACAGGATTGCAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTATC
AAGGCTCTTGATGATCAAACCGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGACGATGTGAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTATGCCCGTCTCTATCCGAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGGATGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTCAATAAAAACTTCCGTCAGGCTATCAATTTTGCTTTTGACAGAAC
ATCTTATGGGGCTCAGTCTGAAGGGAAAGAAGGTGCAACAAAGATTTTGCGTAACCTAGTGGTTCCTCCAAACTTTGTCA
GTATCAAGGGAAAAGACTTTGGTGAAGTTGTAGCCTCTAAGATGGTCAACTATGGTAAGGAATGGCAAGGTATCAACTTT
GCGGATGGTCAAGACCCTTACTACAATCCTGAGAAAGCCAAGGCTAAGTTTGCGGAAGCTAAGAAAGAACTCGAAGCAAA
GGGTGTTCAATTCCCAATCCACTTGGATAAGACTGTGGAAGTAACAGATAAAGTAGGCATACAAGGAGTTAGTTCTATCA
AACAATCAATTGAATCTGTTTTAGGTTCTGATAATGTAGTGATTGACATTCAGCAATTAACATCAGATGAGTTTGACAGT
TCAGGCTACTTTGCTCAAACAGCTGCTCAGAAAGACTATGATTTATATCATGGCGGTTGGGGACCTGATTACCAAGATCC
ATCAACTTATCTGGACATCTTGAGTGTGAAGAGTGGCGGAATGCTGCAAAACTTCGGTTTAGAACCAGGTGAAGTTAATG
AAAAAGCTAAGGCGGTTGGGCTTGATACCTATACTCAAATGTTGGAAGAAGCTAATAAAGAGCAAGATCCAGCCAAACGT
TATGAGAAATATGCTGATATTCAAGCTTGGTTGATTGATAGTTCTTTAGTTCTTCCAAGTGTTTCGCGTGGGGGAACCCC
ATCATTGAGAAGAACCGTACCATTTGCTGGTGCCTATGGTTTAACCGGTACAAAAGGGGTTGAATCATATAAATACCTCA
AAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.187

100

0.574
  amiA3 Streptococcus thermophilus LMD-9

56.641

100

0.569
  amiA3 Streptococcus thermophilus LMG 18311

56.489

100

0.567

Multiple sequence alignment