Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FXN65_RS04330 Genome accession   NZ_CP043311
Coordinates   900956..902557 (-) Length   533 a.a.
NCBI ID   WP_151131868.1    Uniprot ID   A0A5J6QHA4
Organism   Metapseudomonas lalkuanensis strain PE08     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 895956..907557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN65_RS04305 (FXN65_04305) pilV 896654..897205 (-) 552 WP_178119266.1 type IV pilus modification protein PilV -
  FXN65_RS04310 (FXN65_04310) - 897263..897880 (-) 618 WP_151131862.1 GspH/FimT family pseudopilin -
  FXN65_RS04315 (FXN65_04315) - 897874..898386 (-) 513 WP_151131864.1 GspH/FimT family pseudopilin -
  FXN65_RS04320 (FXN65_04320) thiO 898502..899596 (+) 1095 WP_151131865.1 glycine oxidase ThiO -
  FXN65_RS04325 (FXN65_04325) pilR 899616..900953 (-) 1338 WP_151131867.1 sigma-54 dependent transcriptional regulator Regulator
  FXN65_RS04330 (FXN65_04330) pilS 900956..902557 (-) 1602 WP_151131868.1 PAS domain-containing sensor histidine kinase Regulator
  FXN65_RS04335 (FXN65_04335) - 902547..902783 (-) 237 WP_151131870.1 PP0621 family protein -
  FXN65_RS04340 (FXN65_04340) - 902954..904585 (+) 1632 WP_178119267.1 NAD+ synthase -
  FXN65_RS04345 (FXN65_04345) - 904646..905665 (-) 1020 WP_151131874.1 outer membrane protein assembly factor BamD -
  FXN65_RS04350 (FXN65_04350) rluD 905813..906787 (+) 975 WP_151131876.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FXN65_RS04355 (FXN65_04355) pgeF 906784..907509 (+) 726 WP_151131878.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58907.82 Da        Isoelectric Point: 8.0689

>NTDB_id=382795 FXN65_RS04330 WP_151131868.1 900956..902557(-) (pilS) [Metapseudomonas lalkuanensis strain PE08]
MNADTRPLPTGLSAQGRRIFRLYSLYRLLIGLVLVLLISSEMDDRLLDLARPDLFRNASWFYLILNALIAALVPRPRSMV
QVFSLAVVDVLLLSCLFFAAGGTPSGIANLIVVSVAISNILLRGRIGLLVAAVAAIGLIYLTFYLSISQPAAASQFVQAG
GFGALCFAAALFIQGLSRRLQISETLAEQRAEDVANLEALNAQILERMRTGILVLDPRNQVLLANNGALALLGKDNLSGQ
ALSSQCPELLESLRQWLANPTLRPQSLQAFADGPTLQPSFVHLQRGGQQNTLVFLEDISQIAQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESDELQSPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLTRFASEFRTSA
SPNQTLHLSTLGSTLQTRMDPHQLTQVLTNLVQNGLRYSSKKNTEGQVWLKLFRDPESDLPVLEVEDDGEGVPPEQVHNI
FEPFFTTDSKGTGLGLYISRELCESNQARLDYKPREHGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=382795 FXN65_RS04330 WP_151131868.1 900956..902557(-) (pilS) [Metapseudomonas lalkuanensis strain PE08]
GTGAACGCTGATACCCGCCCACTCCCGACCGGGCTCAGCGCCCAGGGGCGACGCATCTTCCGCCTCTACAGCCTCTACCG
GCTGCTGATCGGCCTGGTGCTGGTACTCCTGATCTCCAGCGAAATGGACGACCGCCTGCTGGATCTCGCACGGCCCGACC
TGTTCCGCAACGCCAGCTGGTTCTACCTGATCCTGAACGCCCTGATCGCCGCCCTGGTGCCCCGCCCAAGGAGCATGGTG
CAGGTCTTCAGCCTGGCCGTGGTGGATGTATTGCTGCTCTCCTGCCTGTTCTTCGCGGCCGGCGGCACACCGAGCGGCAT
CGCCAACCTCATCGTGGTCTCGGTGGCCATCTCCAATATCCTCCTGCGTGGGCGTATCGGGCTCCTGGTGGCCGCAGTGG
CGGCGATCGGGCTGATCTACCTGACCTTCTACCTCAGCATCAGCCAACCCGCGGCCGCCAGCCAGTTCGTCCAGGCCGGC
GGTTTCGGCGCCTTGTGCTTTGCCGCAGCCCTGTTCATCCAGGGGCTGAGTCGACGCCTGCAGATCAGCGAGACGCTTGC
GGAGCAACGCGCAGAGGATGTGGCCAACCTGGAGGCGCTGAACGCGCAGATCCTCGAACGCATGCGCACCGGCATCCTGG
TGCTGGACCCTCGCAACCAGGTCCTGCTCGCCAACAATGGCGCCCTGGCCCTGCTGGGCAAGGACAACCTGTCGGGCCAA
GCCCTGAGCAGCCAATGCCCCGAACTGCTGGAAAGCCTGCGGCAATGGCTCGCCAACCCGACCCTTCGCCCACAGAGTCT
CCAGGCATTCGCCGACGGTCCGACGCTGCAACCGAGCTTCGTCCACCTCCAGCGGGGCGGTCAGCAGAATACCCTGGTCT
TCCTCGAGGACATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAACTCGCCTCCCTTGGCCGCCTGACCGCAGGCATC
GCCCATGAAATCCGCAACCCCCTGGGCGCCATCAGCCACGCAGCCCAGTTGCTGCAGGAGTCGGACGAACTCCAGAGCCC
CGATCGGCGCCTGGCGCAGATCATCCAGGACCACTCGCGGCGCATGAACCTCGTGATCGAGAACGTGCTCCAGCTGTCCC
GCCGTCGCCAGTCGGAACCCCAGCTGCTGGATCTCAAATACTGGCTGACCCGTTTCGCCAGTGAATTCCGCACGTCCGCG
AGTCCCAACCAGACCCTGCACCTGAGCACACTCGGCAGCACGCTGCAGACCCGCATGGACCCGCACCAGCTCACCCAGGT
GCTGACCAACCTGGTGCAGAACGGCCTGCGCTACAGCAGCAAGAAGAACACCGAGGGCCAGGTCTGGCTCAAGTTGTTCC
GCGACCCCGAAAGCGACCTGCCGGTACTGGAAGTGGAAGACGACGGGGAAGGCGTCCCGCCTGAGCAGGTACACAATATC
TTCGAGCCCTTCTTCACCACCGACAGCAAGGGCACGGGCCTCGGCCTGTACATCTCCCGCGAGCTCTGTGAAAGCAACCA
GGCCCGCCTCGACTACAAACCGCGCGAGCACGGCGGCAGCTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-376)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QHA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.667

97.373

0.649

Multiple sequence alignment