Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FXN65_RS04325 Genome accession   NZ_CP043311
Coordinates   899616..900953 (-) Length   445 a.a.
NCBI ID   WP_151131867.1    Uniprot ID   A0A5J6QFF5
Organism   Metapseudomonas lalkuanensis strain PE08     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 894616..905953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN65_RS04290 (FXN65_04290) - 895010..895321 (-) 312 WP_151131855.1 hypothetical protein -
  FXN65_RS04295 (FXN65_04295) - 895333..895830 (-) 498 WP_151131857.1 PilX N-terminal domain-containing pilus assembly protein -
  FXN65_RS04300 (FXN65_04300) - 895840..896649 (-) 810 WP_151131858.1 PilW family protein -
  FXN65_RS04305 (FXN65_04305) pilV 896654..897205 (-) 552 WP_178119266.1 type IV pilus modification protein PilV -
  FXN65_RS04310 (FXN65_04310) - 897263..897880 (-) 618 WP_151131862.1 GspH/FimT family pseudopilin -
  FXN65_RS04315 (FXN65_04315) - 897874..898386 (-) 513 WP_151131864.1 GspH/FimT family pseudopilin -
  FXN65_RS04320 (FXN65_04320) thiO 898502..899596 (+) 1095 WP_151131865.1 glycine oxidase ThiO -
  FXN65_RS04325 (FXN65_04325) pilR 899616..900953 (-) 1338 WP_151131867.1 sigma-54 dependent transcriptional regulator Regulator
  FXN65_RS04330 (FXN65_04330) pilS 900956..902557 (-) 1602 WP_151131868.1 PAS domain-containing sensor histidine kinase Regulator
  FXN65_RS04335 (FXN65_04335) - 902547..902783 (-) 237 WP_151131870.1 PP0621 family protein -
  FXN65_RS04340 (FXN65_04340) - 902954..904585 (+) 1632 WP_178119267.1 NAD+ synthase -
  FXN65_RS04345 (FXN65_04345) - 904646..905665 (-) 1020 WP_151131874.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49524.86 Da        Isoelectric Point: 5.4635

>NTDB_id=382794 FXN65_RS04325 WP_151131867.1 899616..900953(-) (pilR) [Metapseudomonas lalkuanensis strain PE08]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEAREWLGREPFDLCLTDMRLPDGTGLELVQYIQQRHPMVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSSPEEGEAPVDGRLLGSSPPMNALRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRAERPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAIRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLADSM
LKRLAQQSGLPAASLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLAEASGAAEAGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=382794 FXN65_RS04325 WP_151131867.1 899616..900953(-) (pilR) [Metapseudomonas lalkuanensis strain PE08]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAGTTGCTGGAAATCACCCTCGGCCGGATGAA
GCTCGACACTCGCAGCGCCCGCAACCTCAAGGAGGCCCGCGAATGGCTGGGTCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAATACATCCAGCAGCGGCACCCGATGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACCGCCGTGAACGCGCTCAAGGCGGGCGCCTTCGACTTCGTCACCAAGCCGGTGGA
TCTCGGCCGCCTGCGTGAGCTGGTCAACACTGCCCTGCGCCTCAGCTCTCCCGAGGAGGGCGAAGCGCCGGTGGACGGTC
GCCTGCTGGGCAGCTCGCCGCCCATGAACGCCCTGCGCAAGCAGATCCAGAAACTCGCCCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATCCACGAGCAGGGTCCCCGCGCAGAGCGCCCCTT
CGTGCCAGTCAACTGCGGCGCCATTCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GCGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAGAAAGCCATTCGCGCCGTGGGCGGACAGCAGGAAGTCGTGGT
CGATGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCCGAAGTGGCCGCCGGCCGTTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAACTCAGCGTGCCGCCGTTGCGCGAACGCCGCGAAGACATTCCGCTCCTGGCCGATTCCATG
CTCAAGCGCCTGGCCCAGCAGAGTGGACTGCCAGCCGCCAGCCTCGCCCCGGAAGCCCTCGACAAACTCAAGTGCTACCG
TTTTCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACACTCTGCGAGGATGACCAGATCCAGGCCC
GCGACCTGCGCCTTGCCGAAGCCAGCGGCGCCGCCGAGGCAGGAGAGGCCAGCCTGGCGCAGATCGACAATCTGGAAGAC
TACCTGGAGGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAAGAAACCCGCTGGAACCGCACCGCCGCAGCCCAGCG
CCTGGGCCTGACCTTCCGCTCGATGCGTTATCGGCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QFF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.865

100

0.879
  pilR Acinetobacter baumannii strain A118

50.327

100

0.519

Multiple sequence alignment