Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FYN22_RS13345 Genome accession   NZ_CP043307
Coordinates   2752345..2752743 (-) Length   132 a.a.
NCBI ID   WP_148826705.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747345..2757743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS13315 (FYN22_13315) - 2747417..2747686 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  FYN22_RS13320 (FYN22_13320) rapZ 2747683..2748534 (-) 852 WP_148826701.1 RNase adapter RapZ -
  FYN22_RS13325 (FYN22_13325) panC 2748561..2749403 (-) 843 WP_125274089.1 pantoate--beta-alanine ligase -
  FYN22_RS13330 (FYN22_13330) panB 2749407..2750216 (-) 810 WP_148826702.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FYN22_RS13335 (FYN22_13335) folK 2750253..2750741 (-) 489 WP_148826703.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FYN22_RS13340 (FYN22_13340) pcnB 2750738..2752207 (-) 1470 WP_148826704.1 polynucleotide adenylyltransferase PcnB -
  FYN22_RS13345 (FYN22_13345) comEA 2752345..2752743 (-) 399 WP_148826705.1 ComEA family DNA-binding protein Machinery gene
  FYN22_RS13350 (FYN22_13350) mazG 2752762..2753523 (-) 762 WP_062033385.1 nucleoside triphosphate pyrophosphohydrolase -
  FYN22_RS13355 (FYN22_13355) - 2753642..2754409 (+) 768 WP_062033388.1 SDR family oxidoreductase -
  FYN22_RS13360 (FYN22_13360) - 2754449..2756755 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14569.96 Da        Isoelectric Point: 10.8498

>NTDB_id=382773 FYN22_RS13345 WP_148826705.1 2752345..2752743(-) (comEA) [Acinetobacter johnsonii strain Acsw19]
MIKIKVSLLIIALLLLSLLAWVPSGYAQSFDQNYLNWKAEQQAWDDRTQAPKSVKRAVSPVQAQPVSNANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGSFKTIDELQQVRGIGPAIFAKNKARLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=382773 FYN22_RS13345 WP_148826705.1 2752345..2752743(-) (comEA) [Acinetobacter johnsonii strain Acsw19]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTGCTGAGTTTATTGGCTTGGGTGCCCAGTGGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTACTCAAGCCCCCAAGAGCG
TGAAACGTGCTGTGTCGCCTGTTCAGGCCCAACCTGTGTCGAACGCAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTGCAGCAACTTCAGGGTGTGGGTTTAAAAAAGGCCCAGGCAATCGTGGCCTATCGCCAGAAACAAGGGTCATTTAA
GACCATAGATGAGTTACAACAGGTGCGCGGTATTGGACCAGCGATTTTTGCAAAAAATAAAGCCCGTTTAGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.098

92.424

0.5
  comEA Acinetobacter baumannii D1279779

50

93.939

0.47
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364

Multiple sequence alignment