Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FYN22_RS05115 Genome accession   NZ_CP043307
Coordinates   1065732..1066436 (-) Length   234 a.a.
NCBI ID   WP_148825750.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060732..1071436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS05095 (FYN22_05095) - 1061612..1062915 (+) 1304 Protein_974 IS4 family transposase -
  FYN22_RS05100 (FYN22_05100) - 1063102..1063407 (+) 306 WP_004696180.1 hypothetical protein -
  FYN22_RS05105 (FYN22_05105) - 1063594..1064367 (+) 774 WP_004982314.1 M48 family metallopeptidase -
  FYN22_RS05110 (FYN22_05110) - 1064494..1065543 (-) 1050 WP_148825749.1 NADP(H)-dependent aldo-keto reductase -
  FYN22_RS05115 (FYN22_05115) crp 1065732..1066436 (-) 705 WP_148825750.1 cAMP-activated global transcriptional regulator CRP Regulator
  FYN22_RS05120 (FYN22_05120) - 1066584..1067006 (+) 423 WP_148825751.1 OsmC family protein -
  FYN22_RS05125 (FYN22_05125) clpB 1067397..1069976 (+) 2580 WP_148825752.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26285.86 Da        Isoelectric Point: 4.7436

>NTDB_id=382760 FYN22_RS05115 WP_148825750.1 1065732..1066436(-) (crp) [Acinetobacter johnsonii strain Acsw19]
MTSSFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANSQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKANADDYEDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=382760 FYN22_RS05115 WP_148825750.1 1065732..1066436(-) (crp) [Acinetobacter johnsonii strain Acsw19]
ATGACTTCAAGCTTTTCACAATTAAGCACTGATGCGCTGTCTCCAGGTCAACTCCCCGAGTCAGTCAAAGCATTATTAAA
ACGCGCATATATTAATCGTTATCCTAAGCGTACTACCATCGTAGATGCAGGCTCAGAATCTAAATCTTTATATTTGATTT
TAAAAGGTTCGGTCTCCATTATTCTGCGTGAAGACGATGAACGTGAAATCGTGGTCGCTTATTTAAATGCGGGTGATTTT
TTTGGGGAAATGGGTCTATTCGAAGCAAACTCACAACGTACTGCTGAAGTGCGTACCCGTGATGTCTGCGAAATTGCTGA
AGTGACTTATGAAAACTTCCATGAACTCAGCAAACAATACCCTGACCTGAGCTATGCAGTATTTGCACAGCTGGTACGCC
GTCTAAAAAATACCACTCGTAAAGTGACTGACCTTGCATTTATCGATGTTTCAGGTCGTATTGCACGTTGTCTAATCGAC
CTATCTTCGCAACCTGAAGCGATGATTTTACCAAATGGCCGCCAAATTCGTATTACGCGTCAAGAGATTGGACGTATTGT
CGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTAAAAACACTCGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCCA
TCTTAATTTTTGATGCCTCTTTAGAAGAGTCAAAAGCGAATGCTGATGACTATGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

48.205

83.333

0.402

Multiple sequence alignment