Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BSUW23_RS18795 Genome accession   NC_014479
Coordinates   3655978..3656097 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus spizizenii str. W23     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650978..3661097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS18770 (BSUW23_18485) - 3651149..3652432 (+) 1284 WP_003222013.1 pitrilysin family protein -
  BSUW23_RS18775 (BSUW23_18490) albG 3652429..3653130 (+) 702 WP_003222015.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  BSUW23_RS18780 (BSUW23_18495) - 3653267..3654622 (-) 1356 WP_003222017.1 YncE family protein -
  BSUW23_RS18790 (BSUW23_18505) rapF 3654849..3655994 (+) 1146 WP_003222022.1 response regulator aspartate phosphatase RapF Regulator
  BSUW23_RS18795 (BSUW23_18510) phrF 3655978..3656097 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  BSUW23_RS18800 (BSUW23_18515) speB 3656250..3657122 (-) 873 WP_003222025.1 agmatinase -
  BSUW23_RS18805 (BSUW23_18520) speE 3657183..3658013 (-) 831 WP_003222027.1 spermidine synthase -
  BSUW23_RS18810 (BSUW23_18525) - 3658215..3660290 (+) 2076 WP_003222029.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=38228 BSUW23_RS18795 WP_003222023.1 3655978..3656097(+) (phrF) [Bacillus spizizenii str. W23]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=38228 BSUW23_RS18795 WP_003222023.1 3655978..3656097(+) (phrF) [Bacillus spizizenii str. W23]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACAAATATTGCAAATGCACC
TACCCACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment